Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0858 ATGGGCCTATCAAGTCTCCCAGCACCTTCTGAAGGAGTGTTATGTATAATTCTGGTGAACACTGCAATGTCAATATCTATAGTTAAAGCCATTTTTAGGACATTCCTTCACATTGTTGGTATCCATGTTTCATCACCCTCCCCTCCAACAGAAAACTCCCAAAACCCACCTGATCCATCTGAGTTCCAATATCTCAGTCCCTCAGAGGGTTTCATTGAAGACTTCAGAAGCAAGACACCAACGCTTAGGTTTGAGAGTGTGTGTAGCAGTTGCAAACAACAACCTGAACATGAGTGTTCAGTGTGTCTCACTAAATTTGAACCAGAATCAGAGATAAACTGTTTACCTTGTGGCCATCTCTTCCATAAAGCATGCTTGGAGAAATGGTTGGACTATTGGAACATTACGTGCCCACTTTGCAGGACTCCCTTAATGCCTGAAGATGATGCATCTTGCTTTTGGTAA 465 0.4258 MGLSSLPAPSEGVLCIILVNTAMSISIVKAIFRTFLHIVGIHVSSPSPPTENSQNPPDPSEFQYLSPSEGFIEDFRSKTPTLRFESVCSSCKQQPEHECSVCLTKFEPESEINCLPCGHLFHKACLEKWLDYWNITCPLCRTPLMPEDDASCFW* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0858 154 PANTHER - 1 154 IPR044249 -
Lja6g0858 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 146 IPR013083 -
Lja6g0858 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Lja6g0858 154 Pfam Ring finger domain 98 141 IPR001841 -
Lja6g0858 154 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 154 - -
Lja6g0858 154 SMART ringv_2 98 141 IPR011016 GO:0008270
Lja6g0858 154 ProSitePatterns Zinc finger PHD-type signature. 88 140 IPR019786 -
Lja6g0858 154 SMART ring_2 99 140 IPR001841 -
Lja6g0858 154 SUPERFAMILY RING/U-box 90 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0858 Lja-Chr6 19224151 19226096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0858 1 148 C3H Transcription Factor Family AT2G04240 61.538 6.24e-59 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0858 K16285 - gmx:100306440 250.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0858 6 19224151 19226096 Lja6g0858 6 19224151 19226096 ECH