Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0843 ATGTGCTTTTGTACATTCATAATTGCATCTTCATCTTCACATGTTGCTAGTTCCTCCTTAACTGCATCATCATCATCTGTTTTAGCCAGATTACAAAAAAGAGAAGCATGTGCTTTGCTGAAGTGGAAAGCCAGCCTTGAGAACCAAAGCCAAGCTTTGCTATCTTCATGGTCTGGCAATGGCAACAGCTCATGCACTTGGCTCGGAATTACATGTGATAAGTACTCCAAATCAGTCTCCAACATAAATCTCACGAACATGGGACTAAGAGGTACGCTTGAAAGCCTAAACTTGACATCATTTCCAAACATTCTCACTCTGAATGTAAGAAACAACTCTTTCAGTGGAAGTATTCCACGCCTCATCAGGGTCTTGTCTAAGCTCTCCCATCTTGATCTTAGTCACAATCATCTCTCTGGAACAATCCCATCTGAAATAACAGAATTGGCTAGTCTTCATACTTTAGATTTGTCTAATAATGTTTTCAGTGGTTCTATTCCTCGAGAAATAGGTAAATTGAGGAACTTGAGAGAGCTTACATTCGAATTTACCAATCTCACAGGGTCTATCCCAATATCTTTAGGGAAGCTAGTGTCCTTGTCCCATCTTGCTCTTTGGAACAATAATCTCACAGGATCTATCCCAATTTCTATAGGAAACTTGGCCAACTTGTCATATCTAGATTTAACCGGGAACAAACTTTCTGGTTACCTTCCTAAGGAAATTGGAAAACTGTCAAACCTCGAGCATTTATGGCTTGGACGTAATAACTTTTACGGTACAATTCCTCAAAAAAATTGTCAAGAAAACAAATTATCTGGCCACATACCAGAGGGAATTGGGGAGTTGGTCAATCTTAGCGATTTCTGGTTACTAGACAATAATCTTTCTGGTTCCATTCCTCAAGGAATTGGAATGATGAAAAATATTTTTCTACTGGACATATCCAATAACTTTCTCTCTGGTACAATCCCTTCTACAATTGGAAACTTGAGCAATTTGCAATACCTTTACCTTTATAGCAACATTCTCACTGGTTCCATTCCCCATGAAGTTGGCAAGCTCTTTTCTCTTGTCACAATCCAACTGTTAGGTAACAAGCTTTCTGGGCTAATCCCACCTTCCATAGGTAACTTGGTCAATTTGGAATCCGTTATCATAGAAAAAAATGAAATCTCTGGACCAATTCCTTCCACAATCGGAAATTTGACAAAGGTCAGTGTTCTATCTTTATCCACTAACTTTCTCTCTGGTACAATCCCTTCTACAATTGGAAATTTGACAAAGGTCAGTGTTCTATCTTTACTCTCAAATCAACTCAGTGGCAACATTCCGATCGAAATGAACAAGCTTACCAATTTGGTAAGTTTGCAGTTATCTGATAATGATTTCATTGGTCAGTTGCCCCAGAACATTTGCACTGGTGGAAAGTTGGAAAAAATCAGTGCTACGGGTAACCACTTCACAGGTCCAGTTCCAAAGAGCTTGAAGAATTGCTCCAGCCTTAGAAGAGTTAGACTTGAACAAAATCATCTAACTGGAAATATAACAGAGGATTTTGGAGTATACCCATATTTGGACTACATGGGATTGAGTGGAAATAATATTTCTGGCCACCTTTCAATCAACTGGGGAAAGTGCATTAACTTGACAAGCCTCCAGATCTCCAACAATAATTTGTCAGGTGGTATACCGCCGGAATTAAGCAAGGCGGCCAACTTGCGTGTACTCGACTTGTCTTCAAACCATCTCACAGGAAATATTCCAAAGGACCTAGGCAACTTATCGTTGCTGATCAAGTTTTTGGTAAGCCACAATCATCTTTCAGGAAACGTTCCTGTAGAAGTCACATCATTACAAGGACTTGATTCCTTTGATGTAGCATCAAATAATTTAAGTGGCTTCATCCCAGAACAACTTGAAAGGTTGCCAAGGTTATTGCACTTGAATTTGAGCCAAAACAAATTCAAAGGAAATATTCCTATTGAGTATGGCCAGTTCCAAGTTCTTCAAGATCTTGATCTTAGTGGAAACCTTTTGGGTGGAGAAATACCATCAACGCTTGGGCAACTAAGATACTTAATAACTTTGAACATCTCACATAATAATCTTTCTGGTGTCATTCCCTCGAGCTTTGATCAGATGTTAAGCTTGTCATATGTTGATATATCATATAACCAGTTAGAGGGTCCACTTCCAAATACTCCAGCCTTCCATAACGCTTCAATTGAAGTGTTAAGAAACAATAAAGGCTTGTGTGGAAATCTCTCTAGCTTGAAGCATTGCCCAGCATCAAGTGGAAGATCTCATGCTCATAAGAAGAGTAACAAAGTCTTATTGATAATTGTACCTATCATTGTGGGTACCCTAGTACTAGCATTAATTTATTTCGGGGTCTCATATCATCTTTACTGGAGATCAAAAACAAACGAAGTGCCCCAAAATGCAGAATCACAAGCTCAAGATCTATTTTCAATATGGAGTTTTGATGGAAAAATGGTGTACGAGAACATTATTGAAGCCACAGAGGAGTTTGACAACAAACATCTAATTGGTACTGGAGGGCAGGGATGTGTTTACAAAGCAGAGTTGCACACGGGTCAAGTTGTTGCTGTCAAGAAACTCCATTCAATACCAAATGGAGAAATGTCCAATCTAAAAGCTTTCACAAGTGAGATCATAGCTTTGACGGAAATTCGACATCGCAACATTGTGAAGCTATATGGATTTTGCTCACATTCACGGTTCTCATTTTTGGTTTACGAGTTCTTGCAGAAAGGTAGTGTGGATATGGTTTTGAAAGATGGTGAACAAGCAGGTGCATTTGAGTGGAATAAGAGGGTGAATGTCATCAAAGATGTAGCCAGTGCTTTATGCTACATGCACCATGATTGCTCACCACCTATCGTTCATCGAGATATATCAAGCAAGAATGTTCTATTGGATTCAGAATATGTGGCTCATATCTCAGACTTCGGAACAGCTAAGCTTCTGAATCCTAATTCAACTAATTGGACCACATTTGCAGGCACCTTTGGATACGCTGCTCCAGAACTTGCCTACACAATGGAAGTAAATGAGAAATGTGATGTCTATAAAGAGTTATCTTCATCCTTGCTATCATCAACACTTGATACCACTCCATTGATGGATAAGTTAGACCCACGTCTCTCTGGTCCCAGAAGAGCTTTTGCTAACGAATTGGAATCAATTTCAAGGACAGCAATTTCCTGCTTGACTGAGAGCCCATATTCTCGCCCTACCATGAAGCAAGTTGTCAAGGAGCTTGAGATGTCAAAGTCATCTTCAATGGATTAG 3318 0.3942 MCFCTFIIASSSSHVASSSLTASSSSVLARLQKREACALLKWKASLENQSQALLSSWSGNGNSSCTWLGITCDKYSKSVSNINLTNMGLRGTLESLNLTSFPNILTLNVRNNSFSGSIPRLIRVLSKLSHLDLSHNHLSGTIPSEITELASLHTLDLSNNVFSGSIPREIGKLRNLRELTFEFTNLTGSIPISLGKLVSLSHLALWNNNLTGSIPISIGNLANLSYLDLTGNKLSGYLPKEIGKLSNLEHLWLGRNNFYGTIPQKNCQENKLSGHIPEGIGELVNLSDFWLLDNNLSGSIPQGIGMMKNIFLLDISNNFLSGTIPSTIGNLSNLQYLYLYSNILTGSIPHEVGKLFSLVTIQLLGNKLSGLIPPSIGNLVNLESVIIEKNEISGPIPSTIGNLTKVSVLSLSTNFLSGTIPSTIGNLTKVSVLSLLSNQLSGNIPIEMNKLTNLVSLQLSDNDFIGQLPQNICTGGKLEKISATGNHFTGPVPKSLKNCSSLRRVRLEQNHLTGNITEDFGVYPYLDYMGLSGNNISGHLSINWGKCINLTSLQISNNNLSGGIPPELSKAANLRVLDLSSNHLTGNIPKDLGNLSLLIKFLVSHNHLSGNVPVEVTSLQGLDSFDVASNNLSGFIPEQLERLPRLLHLNLSQNKFKGNIPIEYGQFQVLQDLDLSGNLLGGEIPSTLGQLRYLITLNISHNNLSGVIPSSFDQMLSLSYVDISYNQLEGPLPNTPAFHNASIEVLRNNKGLCGNLSSLKHCPASSGRSHAHKKSNKVLLIIVPIIVGTLVLALIYFGVSYHLYWRSKTNEVPQNAESQAQDLFSIWSFDGKMVYENIIEATEEFDNKHLIGTGGQGCVYKAELHTGQVVAVKKLHSIPNGEMSNLKAFTSEIIALTEIRHRNIVKLYGFCSHSRFSFLVYEFLQKGSVDMVLKDGEQAGAFEWNKRVNVIKDVASALCYMHHDCSPPIVHRDISSKNVLLDSEYVAHISDFGTAKLLNPNSTNWTTFAGTFGYAAPELAYTMEVNEKCDVYKELSSSLLSSTLDTTPLMDKLDPRLSGPRRAFANELESISRTAISCLTESPYSRPTMKQVVKELEMSKSSSMD* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0843 1105 Pfam Protein kinase domain 846 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0843 1105 ProSiteProfiles Leucine-rich repeat profile. 127 149 IPR001611 GO:0005515
Lja6g0843 1105 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 135 267 - -
Lja6g0843 1105 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 26 163 - -
Lja6g0843 1105 SMART LRR_typ_2 125 148 IPR003591 -
Lja6g0843 1105 SMART LRR_typ_2 451 475 IPR003591 -
Lja6g0843 1105 SMART LRR_typ_2 572 595 IPR003591 -
Lja6g0843 1105 SMART LRR_typ_2 331 355 IPR003591 -
Lja6g0843 1105 SMART LRR_typ_2 245 269 IPR003591 -
Lja6g0843 1105 SMART LRR_typ_2 667 691 IPR003591 -
Lja6g0843 1105 SMART LRR_typ_2 403 427 IPR003591 -
Lja6g0843 1105 SMART LRR_typ_2 197 221 IPR003591 -
Lja6g0843 1105 SMART LRR_typ_2 149 173 IPR003591 -
Lja6g0843 1105 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Lja6g0843 1105 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 268 363 - -
Lja6g0843 1105 ProSiteProfiles Protein kinase domain profile. 845 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0843 1105 PRINTS Leucine-rich repeat signature 128 141 - -
Lja6g0843 1105 PRINTS Leucine-rich repeat signature 221 234 - -
Lja6g0843 1105 SMART LRR_sd22_2 403 429 - -
Lja6g0843 1105 SMART LRR_sd22_2 125 148 - -
Lja6g0843 1105 SMART LRR_sd22_2 331 352 - -
Lja6g0843 1105 SMART LRR_sd22_2 221 250 - -
Lja6g0843 1105 SMART LRR_sd22_2 571 597 - -
Lja6g0843 1105 SUPERFAMILY L domain-like 268 494 - -
Lja6g0843 1105 SUPERFAMILY Protein kinase-like (PK-like) 827 1098 IPR011009 -
Lja6g0843 1105 Gene3D Ribonuclease Inhibitor 446 770 IPR032675 -
Lja6g0843 1105 SUPERFAMILY RNI-like 419 743 - -
Lja6g0843 1105 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 135 267 - -
Lja6g0843 1105 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 26 163 - -
Lja6g0843 1105 ProSitePatterns Tyrosine protein kinases specific active-site signature. 969 981 IPR008266 GO:0004672|GO:0006468
Lja6g0843 1105 Gene3D Transferase(Phosphotransferase) domain 1 924 1105 - -
Lja6g0843 1105 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 334 1102 - -
Lja6g0843 1105 Gene3D Ribonuclease Inhibitor 267 351 IPR032675 -
Lja6g0843 1105 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 268 363 - -
Lja6g0843 1105 Gene3D Phosphorylase Kinase; domain 1 806 923 - -
Lja6g0843 1105 Gene3D Ribonuclease Inhibitor 352 445 IPR032675 -
Lja6g0843 1105 Gene3D Ribonuclease Inhibitor 187 266 IPR032675 -
Lja6g0843 1105 Pfam Leucine Rich Repeat 573 595 IPR001611 GO:0005515
Lja6g0843 1105 Pfam Leucine Rich Repeat 127 146 IPR001611 GO:0005515
Lja6g0843 1105 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Lja6g0843 1105 SUPERFAMILY L domain-like 35 264 - -
Lja6g0843 1105 ProSiteProfiles Leucine-rich repeat profile. 573 596 IPR001611 GO:0005515
Lja6g0843 1105 Pfam Leucine rich repeat 199 258 IPR001611 GO:0005515
Lja6g0843 1105 Pfam Leucine rich repeat 670 728 IPR001611 GO:0005515
Lja6g0843 1105 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 334 1102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0843 Lja-Chr6 18857878 18861383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0843 34 1017 Receptor kinase-like Gene Family AT4G08850 41.348 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja6g0843 Pkinase 2.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0843 - - gmx:100811066 1244.95