Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0834 ATGACTAATGGTTTTAAGGACAAGTTGGGTGAAGGAGGCTATGGCTCTGTGTACAAAGGAAAGCTACGTAGTGGACCTTTTGTAGCTGTAAAAATGTTGAGCAAACCTAAGGCTAATGGGCAAGAATTCATTAATGAAGTTGCAACCATAGGAAGAATACATCATGGCAACGTTGTTCAACTTATTGGATTTTGTGCAGAGGCATCCAAACGCGCTCTTGTTTATGAATTTATGCCCAATGGCTCTCTTGATAAATATATCTCGTCCAAAGAGAATGATGTCTCTCTAACTTATAACCAAATGTACACAATATCTCTTGGAGTTGCTCGAGGTATTGCATATTTGCATCAAGGTTGTGACATGCAAATTCTACATTTTGATATCAAGCCTCACAACATCCTTCTTGATGAGAACTTTATTCCTAAAGTTTCGGACTTTGGTCTAGCAAAACTTTACCCGATTGACAATAGCATTGTCACTTTGACTGCGGCAAGAGGAACCATTGGCTATATGGCTCCAGAATTATTTTATCAAAATCTTGGAGGAGTGTCCTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAACAGGAGAAGAAATTTAAATCCATATGCAGATAACTCAAGCCAAATTTTCCTCCCTCTTTGGATTTATGATCAATTGATTGAAGAAAGAGAGATAGAAATTGGAAAAGTTACCTATGAGGAAAACAATAATGTGAGAAAGATGTTCATAGTTGCTTTATGGTGTATACAACTAAGGCCCAATGATCGTCCTTCAATGAACAAAGTAATAGAGATGATCGAAGGAGAAGTTAAAAATCTTATTATGCCTCCAAAACCTTCTCTATACCCAACTGAAAATATTCAACATCCTGGAAACAACTCTAAGGAATCCATATCAGGTGATACTTCTGGCTCAACATGTTTTCTTGAGGAAACTACAGAAAATCCTTTATTGAAGGATTCTTCTTGA 990 0.3687 MTNGFKDKLGEGGYGSVYKGKLRSGPFVAVKMLSKPKANGQEFINEVATIGRIHHGNVVQLIGFCAEASKRALVYEFMPNGSLDKYISSKENDVSLTYNQMYTISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYQNLGGVSYKADVYSFGMLLMEMANRRRNLNPYADNSSQIFLPLWIYDQLIEEREIEIGKVTYEENNNVRKMFIVALWCIQLRPNDRPSMNKVIEMIEGEVKNLIMPPKPSLYPTENIQHPGNNSKESISGDTSGSTCFLEETTENPLLKDSS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0834 329 Gene3D Transferase(Phosphotransferase) domain 1 78 281 - -
Lja6g0834 329 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0834 329 ProSiteProfiles Protein kinase domain profile. 3 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0834 329 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 305 IPR045874 GO:0004672
Lja6g0834 329 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Lja6g0834 329 MobiDBLite consensus disorder prediction 292 329 - -
Lja6g0834 329 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Lja6g0834 329 SUPERFAMILY Protein kinase-like (PK-like) 6 273 IPR011009 -
Lja6g0834 329 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lja6g0834 329 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 1 305 - -
Lja6g0834 329 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0834 329 MobiDBLite consensus disorder prediction 288 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0834 Lja-Chr6 18591670 18592790 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0834 1 292 Receptor kinase-like Gene Family AT5G38280 50.000 1.73e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja6g0834 Pkinase 6.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0834 - - mtr:MTR_1g027830 505.753