Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0829 ATGGACAAGGCAGGTGCTGAAGTTCAAAATGATGCTTCTAGTTCAATGGTGTCTGCAGATCTTGCTCTTCTTCATCACCAGACATGTGGTGGAAATGGAGAAGATGACCAAACCTCCTTGATTGCTCAGTCCAGAAAACCTAGTCTGTCTTCTCTGCAAATACCAGCAAGGTCAATAGAAAGTGCATTATCTTCTTTTACTAGGACAGATGGTCCCACATTGTCAAGTCCAGGTTCCACTAGAGGACTTCCCCCAAGGCCAAATTCTGCAAAAGTCAAGTCCTCTATGAGAAATTTACTTTCGGCGAGGAGCTTTCGGGCGAAAACTAGTTCACAAGATTGTGAAAGGAAAGTTCTTATTGTTCCTGACACTTTGCCATCAGATGGCGGTGCTCTGGATCATAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGGTTGTGTTCCCTGCATCAACAAAAGCAGCACATTCGTTGCCGGTTACTCCAAGTGAAAATTCAGGTGGAGAGAATGTAGATGGAAGACATCCAAGGAGTGATTCTGATTTTAGTAAAATGAAAGTTAATCAACATATGACTCGATCATTTTCAGTTCCGGTTAATGTTCAAACCACTATTTCAAAGCCTACAGATTCTAGGCGCCTGATTCGTGTAATTTCAGCTAGACCAAATCTACCAACTATTGATGACATTTCAAGTCACAATACTTCAGTTTCAGATATTGTCATTGAAGATGCTTCTGAGGATATTCCTGAGGAAGAAGCAGTCTGTAGGATTTGTTTTGTAGAGCTTGGGGAAGGAGGGAATACTCTTAGGATGGATTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACCTGTGATGTCTGCAAGCAGGATGTCCGAAACCTTCCAGTAACGCTCTTGAAAATTTCTAATCCTGTAACTGTTGCTTGGCAGCCATTGAATGTACCACAGCAGAGAGAAGTTACTTCCTACAGGATCTGGCAGGATGTACCAGTACTCGTCTTGGTCAGCATGCTGGCATACTTTTGCTTTCTAGAGGAACTATTGGTTTCTGATTTGGGCTCTCGCGCTCTTGCCATTTCATTACCTTTCTCCTGCGTTTTAGGAATCCTTTCATCTATGATTGCATCAGCCATGGTGAGCAGGAGTTACATATGGGCTTATGCTTGCTTCCAGTTTGCATTTGTCATCCTGCTTGCTCATGTATTCTATTCTATACTTAATGTTAACGCGATTCTATCGGTCATTCTTTCGTCAATCAGTGGATTTGGGATTTCAATCAGTATGAACTCTCTCCTAATGGAATCTATTAAATGGAGAACGAGTAGGCAGATTCAATCTTCGAATCAGAATGTTAACACGTCGCAGCAGCAGCGCCAGGATCATGCCCCACGGCATCAAGAACCTCAAAGACAGCATCCTCAGCTGCAAATGTTGTAG 1488 0.4267 MDKAGAEVQNDASSSMVSADLALLHHQTCGGNGEDDQTSLIAQSRKPSLSSLQIPARSIESALSSFTRTDGPTLSSPGSTRGLPPRPNSAKVKSSMRNLLSARSFRAKTSSQDCERKVLIVPDTLPSDGGALDHKPSTSRSLSLNKVVFPASTKAAHSLPVTPSENSGGENVDGRHPRSDSDFSKMKVNQHMTRSFSVPVNVQTTISKPTDSRRLIRVISARPNLPTIDDISSHNTSVSDIVIEDASEDIPEEEAVCRICFVELGEGGNTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISNPVTVAWQPLNVPQQREVTSYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGSRALAISLPFSCVLGILSSMIASAMVSRSYIWAYACFQFAFVILLAHVFYSILNVNAILSVILSSISGFGISISMNSLLMESIKWRTSRQIQSSNQNVNTSQQQRQDHAPRHQEPQRQHPQLQML* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0829 495 Pfam RING-variant domain 257 304 IPR011016 GO:0008270
Lja6g0829 495 SUPERFAMILY RING/U-box 253 308 - -
Lja6g0829 495 MobiDBLite consensus disorder prediction 464 495 - -
Lja6g0829 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 312 IPR013083 -
Lja6g0829 495 MobiDBLite consensus disorder prediction 31 83 - -
Lja6g0829 495 MobiDBLite consensus disorder prediction 27 95 - -
Lja6g0829 495 PANTHER OS02G0165000 PROTEIN 24 482 - -
Lja6g0829 495 MobiDBLite consensus disorder prediction 155 183 - -
Lja6g0829 495 ProSiteProfiles Zinc finger RING-CH-type profile. 249 311 IPR011016 GO:0008270
Lja6g0829 495 SMART ringv_2 256 305 IPR011016 GO:0008270
Lja6g0829 495 CDD RING_CH-C4HC3_MARCH 257 305 - -
Lja6g0829 495 PANTHER OS02G0165000 PROTEIN 24 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0829 Lja-Chr6 18509442 18516326 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0829 251 311 C3H Transcription Factor Family AT2G37950 46.774 4.64e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0829 - - pvu:PHAVU_006G002500g 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0829 6 18509442 18516326 Lja6g0829 6 18509442 18516326 PCT