Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0813 ATGGTGTCGGGTTTCACTTTCCCCAATTCGAAAACTTGCTTTCTATATGCGAAGATCCAACGTCCTGGGAAGCTGATTGATGGTAGCACGATTGAAGAGGTTTGGTCTGAAACCAGGGGTACGAACTACAAAAATGGAGGATTGGATGGTAGTTCATTTAGGGAATATGGGGATGATTTTGATATGAGTACTGGAGATACAAATGGCAATGAGTTTGAGTCAGGCGATGGTACTGATTATGATCAAACTGAAGACGATGTGAGGGTTGAGCAAGAATTGTATGATTCTGCCATGAATGGTGACTTGGAAAATGAATCAGAAGGCAGAGATGATGATGGTGATGATGATATGAACGAAGATGAAGATGGAGATGACATGAACGAAGATGATGATGAGGGGAATGGAGATTTGTCTGGAGAAGCTCAAATGGGTTATGATAATACTTGTGGCATAACAATTGAATCTCTTCAGGATATCCTATGTATTGACCTGAAGACCTTATGTCCATTGGACATGACTAAGTACGATTTTTCAAATGCTGATGTTGCCTACTTGTTTTACAAGTGGTATGGAAGACTTAATGGCTTTGCTGTGCGGAAAAATAATATCTTGCGAGATAAAACAGAAGAAGTTATTCAAAGGAGGTATGTATGTAGCAGACAAGGAAAACGTAGAGATAATGACAACTTGGTGCGTAAAGTTAGACCTGAGACAAGATGCTGGTGTCTAGCAGAATTTGTGATTCATGTAGACAAAAGCAGTGGTCGATGGCGTGTGAAGCGCTTTGTTGATTCTCATACTCATGACTTACTTCCTCATGAATACACAGCAATGATTGCATCCCATCGGTGTATGGGTGAAGCAGATATATTGCGAATGAATAATATGAGGAAAGCAGGTCTGAGGGGTAGTGATATATTCAAGTCATTTGCAGGTCAATCAGGTGGTTTTTATAACATGGGGTATTCTCTTAAAGACATGCAGAACCAGATTAGTAGGCAAAGAAGGTGGGAACCATCCGATGCAACTGCTGCGGTAGAGTACCTTCGTGGGTTGGAAAAGCATGACTCATTGATGTATTGCCGTGAGAAGAGGCAATGGCATGTGTCTCACTATGAACCTACATCTTTGTTCAGCTGCTCATGCCTTAGGATGGAGTCTCAAGGTCTACCTTGTACGCACCTGATAGCTGTTCTTGCACATCTTAACATTCTAGAGTTCCCTGAATGTTTGATTCTGCGTAGATGGACAAAGGCTGCGAAGCAATTCATTCGAACGGAGAACAATCATGATGGTCATGACAATTTCTTTTGGGAGTCCCAAAAGGCATGCCAATACGCATCATTAGTTGATCATTGCCAGAACATGTCCAAGATGTCCCTCGTAACAGATGACGACTATGAGGAGACAAAAAATATGGTTATCAAACGAATCATGGATTTGAAGGCTAAACACAATAACGTGAGTACGCAGGGTGGTCAAAATGAACATGCATCAAACCCGCACGTCCCTGCTCGCAATGTCATTTCTTCATTGTTGAATCCTATACCCAGAGTGAGAAACGCTGCTGTTAATCCAAATGGTACTAGAGTGAGGCGTGTTCAAAAGTGCAGCCACTGCAAAGCACCTGGCCATAACATTAAGTCATGCCCAGAATTGAGGAATATCTCTCATAGTCAGGGTAATTGA 1689 0.4192 MVSGFTFPNSKTCFLYAKIQRPGKLIDGSTIEEVWSETRGTNYKNGGLDGSSFREYGDDFDMSTGDTNGNEFESGDGTDYDQTEDDVRVEQELYDSAMNGDLENESEGRDDDGDDDMNEDEDGDDMNEDDDEGNGDLSGEAQMGYDNTCGITIESLQDILCIDLKTLCPLDMTKYDFSNADVAYLFYKWYGRLNGFAVRKNNILRDKTEEVIQRRYVCSRQGKRRDNDNLVRKVRPETRCWCLAEFVIHVDKSSGRWRVKRFVDSHTHDLLPHEYTAMIASHRCMGEADILRMNNMRKAGLRGSDIFKSFAGQSGGFYNMGYSLKDMQNQISRQRRWEPSDATAAVEYLRGLEKHDSLMYCREKRQWHVSHYEPTSLFSCSCLRMESQGLPCTHLIAVLAHLNILEFPECLILRRWTKAAKQFIRTENNHDGHDNFFWESQKACQYASLVDHCQNMSKMSLVTDDDYEETKNMVIKRIMDLKAKHNNVSTQGGQNEHASNPHVPARNVISSLLNPIPRVRNAAVNPNGTRVRRVQKCSHCKAPGHNIKSCPELRNISHSQGN* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0813 562 SMART 26again6 378 405 IPR006564 GO:0008270
Lja6g0813 562 MobiDBLite consensus disorder prediction 40 141 - -
Lja6g0813 562 ProSiteProfiles Zinc finger SWIM-type profile. 365 403 IPR007527 GO:0008270
Lja6g0813 562 PANTHER OS03G0181600 PROTEIN 175 353 - -
Lja6g0813 562 PANTHER OS03G0181600 PROTEIN 364 470 - -
Lja6g0813 562 Pfam SWIM zinc finger 379 403 IPR007527 GO:0008270
Lja6g0813 562 Pfam FAR1 DNA-binding domain 186 272 IPR004330 -
Lja6g0813 562 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 364 470 IPR031052 GO:0006355
Lja6g0813 562 MobiDBLite consensus disorder prediction 105 136 - -
Lja6g0813 562 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 175 353 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0813 Lja-Chr6 18282314 18285359 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja6g0813 FAR1 2e-17 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0813 - - mtr:MTR_1g070355 207.994