Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0802 ATGATCATGGGCAATGTTCCACAAACTACAACAAGCAATCCTCCTCCACACCTGTATCCACAGGAACTTCAGCTCAAGCTTTACCAGGCTTTCATATTCTCAATTCCCATACTATTTTCCATTATTCTCATTCTCCTGTTTTATTTGTTCTACCTCAAGAGAAGGACATCCTCTCTCTCATCCTCTGCTCCTCACTTACTTCCAATTGTTACCAATCCAACAACTAGCTATCTCTATCATACCTCACCTTGTCGTTTGGACCTGACCGTCAAATTCCTGGAAAAACTTCCAAGAATTTTATTTGATGAGGATTTGCGAGCAAGGGATTCACTATGTTGTGTTTGTCTAGGAGAATTTGAGATGAAAGAAGAGGTGCTTCAGATTCCTTATTGCAAGCATGTGTTCCACATTGATTGCATACATCACTGGATGCAATCAAACTCCACCTGTCCACTTTGTAGATGTTCCATCATCCCCACTACCACCAAGTTCCTCAATCCAGAATCAGACCCACCTCAGCAAGGTGCTATCATTTCACACTCTCCATTACAAGTCATGTCATTATTGCAACCTCAAAGAGAAGATGAACCCAGTGCTTCCTCAAATACAGAGAATTTTTCAAGGGAACGAATGATGCAGTGGCTGCACTAG 651 0.4178 MIMGNVPQTTTSNPPPHLYPQELQLKLYQAFIFSIPILFSIILILLFYLFYLKRRTSSLSSSAPHLLPIVTNPTTSYLYHTSPCRLDLTVKFLEKLPRILFDEDLRARDSLCCVCLGEFEMKEEVLQIPYCKHVFHIDCIHHWMQSNSTCPLCRCSIIPTTTKFLNPESDPPQQGAIISHSPLQVMSLLQPQREDEPSASSNTENFSRERMMQWLH* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0802 216 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Lja6g0802 216 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 7 167 - -
Lja6g0802 216 Pfam Ring finger domain 112 154 IPR001841 -
Lja6g0802 216 SMART ring_2 112 153 IPR001841 -
Lja6g0802 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 159 IPR013083 -
Lja6g0802 216 SUPERFAMILY RING/U-box 92 160 - -
Lja6g0802 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA4A-RELATED 7 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0802 Lja-Chr6 17909024 17911434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0802 13 207 C3H Transcription Factor Family AT4G10150 34.286 5.49e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0802 K19039 - aprc:113858113 279.641