Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0798 ATGACGGAGGTAGCGAGATCAGTGGTTCATGAAGTTTTTGGAGAAAACATCGTCGACGTTGATGAACCAATCGTCGATTACATCGTCAACGTCCTCGCCGACGACGACTTCGATTTCGGACTCGACGGCGAAGGCGCCTTCGATGCACTCGGCGAGCTCCTCGTCGCCGCCGGCTGCGTCCCCGACTTCCCCGACTGCCGCACCGCTTGTAGCAAGCTCTCTGACAAGTTCGGGAAGCATGGATTGGTGAAGGAGAAGCCAACGGTGCGAAGCCTCACCACGCCGTTTCGAATGAACGAGGGATTGGACGACGGTGTAGCTCCTAAGAAGAAGCCTGAGCCAGTGGATGGTCCTCTCTTGACTGAACGCGACAAATTGAAGCTCGAAAGGAGGAAGAGGAAGGATGAACGACAGAGAGAGGCACAATACCAAATTCATTTGCAAGAGATGGAAGCGGTGCGGGCAGGGATGCCTGTGGTTTGCGTAAGGCATGAGAACATGGGCGGTCCGAATGTGAAGGACATTCACATGGAGAATTTCAATATCTCTGTTGGTGGCCGCGATCTCATTCTCGATGGTTCCATCACTCTCTCTTTTGGAAGGCATTATGGGCTTGTTGGAAGAAATGGTACAGGCAAAACAACTTTTCTCAGGCACATGGCTATGCATGCCGTTGATGGCATTCCCAGGAATTGTCAGATATTGCATGTGGAGCAAGAGGTTGTGGGTGACAATATATCTGCACTGCAGTGTGTTCTCAATTCTGACATCGAGAGAACTCAGCTTCTGGAGGAAGAAGCTCAATTACTTGCCAAACAGAGGGAATCTGAGGAGAGCATTGGACAAGGCAATGATAAACTGAATGGAGGGGTTGAAAGAGATCCCCATTCACAAAGGCTTGAGGAAATATACAAGAGGCTTGAATTCATAGATGCTGATACTGCGGAGTCACGAGCAGCATCTATACTTGCTGGTTTGAGTTTCACTCCTGAAATGCAGAACAAGGCAACAAAAACGTTCTCTGGAGGATGGCGGATGCGAATAGCACTTGCTCGTGCACTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGAACCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCGTACTTGGTTAAGTGGCCAAAAACAGTTATTGTTGTTTCTCATGCTAGAGAATTTTTAAACACGGTGGTTACAGATATAATTCACTTACAAAACCAAAAGCTGACTACTTATAAAGGGGATTATGATAATTTTGAGAAGACACGAGAAGAACAAATCAAAAACCAGCAAAAAGCATTGGAGGCAAATGAACGTTCCAGAGCTCACATGCAGACTTTCATTGACAAGTTTCGCTTTAATGCAAAGAGGGCGTCACTTGTTCAATCAAGAATCAAGGCTCTGGATCGGCTGGGCTTTGTAGATCAAATTGTTAATGATCCTGACTACAAGTTTGAGTTCCCCACTCCAGATGATAGACCAGGCGCACCAATAATAAGTTTCAGTGATGCATCATTTGGGTATCCTGGAGGGCCCATTCTATTTAAGAATTTGAACTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGCATTGGCAAATCTACTATACTTAAGTTAATTGCTGGGGATTTACAACCAACTTCTGGGACCGTCTTCCGTTCTGCTAAGGTTCGAATAGCAGTTTTCAGTCAGCACCACGTTGATGGACTCGACTTATCCTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACTGGAAATCTTGCACTTCAGCCCATGTATACTTTGTCAGGTGGTCAGAAAAGTAGGGTTGCCTTCGCAAAGATTACTTTTAAGAAGCCACACATAATATTGCTTGATGAGCCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGTCTTGTGATGTTCCAAGGAGGAATTCTCATGGTGAGTCACGATGAGCATCTCATCTCTGGAAGCGTAGATGAGTTATGGGTTGTATCCCAAGGAACAGCAACACCATTCCATGGCTCCTTCCAAGATTACAAGAAGATACTCCAGTCATCTTAG 2145 0.4587 MTEVARSVVHEVFGENIVDVDEPIVDYIVNVLADDDFDFGLDGEGAFDALGELLVAAGCVPDFPDCRTACSKLSDKFGKHGLVKEKPTVRSLTTPFRMNEGLDDGVAPKKKPEPVDGPLLTERDKLKLERRKRKDERQREAQYQIHLQEMEAVRAGMPVVCVRHENMGGPNVKDIHMENFNISVGGRDLILDGSITLSFGRHYGLVGRNGTGKTTFLRHMAMHAVDGIPRNCQILHVEQEVVGDNISALQCVLNSDIERTQLLEEEAQLLAKQRESEESIGQGNDKLNGGVERDPHSQRLEEIYKRLEFIDADTAESRAASILAGLSFTPEMQNKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTVIVVSHAREFLNTVVTDIIHLQNQKLTTYKGDYDNFEKTREEQIKNQQKALEANERSRAHMQTFIDKFRFNAKRASLVQSRIKALDRLGFVDQIVNDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGDLQPTSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVDELWVVSQGTATPFHGSFQDYKKILQSS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0798 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 436 IPR003439 GO:0005524
Lja6g0798 714 MobiDBLite consensus disorder prediction 103 121 - -
Lja6g0798 714 Gene3D - 468 714 IPR027417 -
Lja6g0798 714 Gene3D - 130 449 IPR027417 -
Lja6g0798 714 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 121 713 - -
Lja6g0798 714 Pfam ABC transporter 194 368 IPR003439 GO:0005524
Lja6g0798 714 ProSitePatterns ABC transporters family signature. 340 354 IPR017871 GO:0005524
Lja6g0798 714 CDD ABCF_EF-3 504 696 - -
Lja6g0798 714 Pfam ABC transporter 521 651 IPR003439 GO:0005524
Lja6g0798 714 MobiDBLite consensus disorder prediction 273 293 - -
Lja6g0798 714 MobiDBLite consensus disorder prediction 95 121 - -
Lja6g0798 714 Pfam ABC transporter 407 483 IPR032781 -
Lja6g0798 714 SMART AAA_5 199 413 IPR003593 -
Lja6g0798 714 SMART AAA_5 529 696 IPR003593 -
Lja6g0798 714 CDD ABCF_EF-3 175 413 - -
Lja6g0798 714 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 504 713 IPR003439 GO:0005524
Lja6g0798 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 437 IPR027417 -
Lja6g0798 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 701 IPR027417 -
Lja6g0798 714 ProSitePatterns ABC transporters family signature. 623 637 IPR017871 GO:0005524
Lja6g0798 714 PANTHER NON-TRANSPORTER ABC PROTEIN 121 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0798 Lja-Chr6 17796160 17806640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0798 484 665 Calmodulin-binding Proteins AT2G36910 26.636 5.19e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0798 K06158 - gmx:547980 1245.34