Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0796 ATGTTAGTTTCCACTCATGGAATCCTAAAGCAAAAGAAGAAGCATTTGGCTTTCTTCTTCATCTTTCTCTCATTGCTCAGATTTATTTCTGCAATGATGAAGAAGAAGTCTAGCTTAGGTCGCCAAAAAATTCCCATTGAGAAAATACCCAAAAAGAGTCACCTACAAGTAACATTCTCTAAGCGTCGTTCAGGATTATTCAAGAAAGCTAGCGAACTATGCACCTTTTGTGGTGTAGAGATCGCGATTGTGGTTTTCTCTCCGGCCGATAAAGCATTCTCTTTCGGTCATCCAGAAGTTGAGTCCATCATGGATCGTTACGTGACTCGAAACCCTCCCCAAGATCCGTCTGGGGCTTACCAACTTGTTGAGGCTCATCGAAATGCTAATGTACGTGACCACAACATGCACTTGACTCAGCTTCTTAACCATTTGGAGATTGAAAAGAAGCGAGGGGATGAAATGGATCATGTGAGGAGGGCTAGGCTGAGGCAATTTTGGTGGGAGAGCCCTGTTGATGAGCTTGGCTTGCATGAGTTGCTCCAATTAAAGGGTTCTATTGAGGAGCTGCAGAAGGATATGGGAAAACTTGCCAACAAGTTCATGATGGAGCAATCCATTATATCTTCAAGGGCTAATGGACTTGGACATTATGATGCATTTGAGAACAAACCTGGTGTTGAGATTAACTTTGCTTCCGCGCCTAATGCTTACTATCTCGGCTTTTGA 729 0.4321 MLVSTHGILKQKKKHLAFFFIFLSLLRFISAMMKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTFCGVEIAIVVFSPADKAFSFGHPEVESIMDRYVTRNPPQDPSGAYQLVEAHRNANVRDHNMHLTQLLNHLEIEKKRGDEMDHVRRARLRQFWWESPVDELGLHELLQLKGSIEELQKDMGKLANKFMMEQSIISSRANGLGHYDAFENKPGVEINFASAPNAYYLGF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0796 242 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Lja6g0796 242 Gene3D - 119 214 - -
Lja6g0796 242 ProSiteProfiles MADS-box domain profile. 39 99 IPR002100 GO:0003677|GO:0046983
Lja6g0796 242 PANTHER MADS BOX PROTEIN 38 210 - -
Lja6g0796 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 38 210 - -
Lja6g0796 242 Coils Coil 180 200 - -
Lja6g0796 242 PRINTS MADS domain signature 76 97 IPR002100 GO:0003677|GO:0046983
Lja6g0796 242 PRINTS MADS domain signature 41 61 IPR002100 GO:0003677|GO:0046983
Lja6g0796 242 PRINTS MADS domain signature 61 76 IPR002100 GO:0003677|GO:0046983
Lja6g0796 242 Gene3D - 51 118 IPR036879 GO:0003677|GO:0046983
Lja6g0796 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 48 95 IPR002100 GO:0003677|GO:0046983
Lja6g0796 242 SUPERFAMILY SRF-like 40 122 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0796 Lja-Chr6 17761089 17761817 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0796 36 201 Type I MADS-box Gene Family AT5G60440 54.167 1.75e-55 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja6g0796 SRF-TF 6.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0796 - - lja:Lj0g3v0067779.1 480.33