Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0794 ATGCTTCTTCACCTTCACAACCATCACCACCTTGTTACCATTTTGTTCTCTCTATTTGGAATCACTTCACTATTAAGCACTTTTGCAGAATCAGAACAACAACCCATTTACAACTACAACTACTGCCCACAAAACACAACATTCGATTCCACCACCACATTCCAAACCAACCTCCGTGTTCTTCTCTCCTCCCTCATCGCCACCTCACAAACCTACGCCTCTTACTACTCCTCCATAAACCCCGGCACCAAAGACGTCGCCAACGGCCAATTCCTCTGCCGCGCCGACGTCTCCTCCGCCGTCTGTGACAACTGCATCACCGCCGCCGCCGGAGAACTTTCGCGGCGGTGTCCTAACAAGTCCCAGTCGATTGTATGGTACGACGAGTGTATGCTGGGTTACACCAATCGGTACTACCCCTACACCGAAACCGATCCAGGAACGACGCTGTGGGGTGAGAAGAACGTTTCTGCTTCTGATTTGAGCAGCTTCAATCGGACGTTGTTTGGGTTGTTGGGTGGGTTGCGTGATCAGGCTTCGAGTTCGCCGTCGCCGACAAAATTCGCCACCAGGGAAGCGGATTTTGTCGGCGGCGGTGGTGGTGGTGACGGCGGATCGTCCTCATCGCGGCGGGTTTACGGGCTGGCGCAGTGCTTGCCGGACATGACTGGGGATCAGTGTGGGCAGTGTTTGCAGAATGCGATTGGAAAACTTGTGGGTTGTTGTGGAGGGAAACAGGGTGCTAGGGTTTTGCTTGCTTGGTGTAATATCAGATATGAATTGTTTCAGTTTTACAATTCAACTGGGTCTTCTTCTTCTCCAGGAAATAAGAAATCTGCCTCACGAAAAATAGGGTTGATTGTGGTCTTGGTTGTCATTTCAATAATTCTCTTATGCTGTATTTCCTATTTGCTGCTGAGAAAATCAAGGAAGAATTATAAGACTCTTCTAAGGGAAAACTTTGGGGATGAAAGTGTCCTTTTGGAGTCATTGCAATTTAGTTTGGCCACAATTGAAGCTGCCACAAGGAAGTTTTCAAGTGAAAACAAAATTGGAAAAGGTGGATTTGGAGAGGTCTACAAGGGAATTCTTTTAGATGGACGAGAAATAGCTGTTAAAAGACTATCTCAGAAGTCAGGACAAGGTGTAATAGAATTCATGAATGAGATCAAGCTGATAGCCAAACTTCAACACAGAAACCTTGTTATTTTGTTAGGATTTTGCTTGGAAGAGAAAGAGAAGATTCTTATTTATGAATTTGTGCCTAATAATAGCCTTGATTACTTTCTATTCCATCCCAACAAGAGCAGATTGTTGAATTGGTTTGAGCGTTATAGAATTATTGAAGGAATTGCAAGAGGAGTTCTTTATTTACATGACCATTCACGTTTGAAAGTCATACATCGTGATCTTAAACCTAGTAATGTATTGTTAGACGACAACATGAATCCAAAAATATCTGACTTCGGCATCGCAAGGATTGTTGCTACAGATGAAGAACAAGGAAGTACAAATAGAATTGTGGGAACATTTGGTTATATGTCTCCGGAATATGCAATGCATGGACAATTTTCAGAGAAGTCAGATGTCTTTAGTTTCGGTGTCATAGTTTTGGAGACAATTAGTGCTAAAAAGAACGCACGCTCTCTGATATCAGATAATGATGATGACCTCTTGGGTTATGCTTGGAGACAATGGAGGGATAAAACACCATTAGAAATATTAGAGCAAGGTGTAAGAGAATCTTGCAATCACAGTGAAGTGATTAAGTGCATCCAAATTGGTTTATTATGTGTGCAAGAGAAGCCAGATGATAGACCTACGATGACGAAAGTTGTTTCATATCTCAGTAGCCCCTTAATTGAGTTGCCATTTCCAGAAGAACCAAAAAGTTATAAGCATAGTGGAGTTGCTCAGAAGATGGTAGCAGGTGAGTCAACTTCAGGTTCTGTATTATCGATGAATGAAATGTCTGTAAGTATATCTATTCCTCGATAG 1998 0.4299 MLLHLHNHHHLVTILFSLFGITSLLSTFAESEQQPIYNYNYCPQNTTFDSTTTFQTNLRVLLSSLIATSQTYASYYSSINPGTKDVANGQFLCRADVSSAVCDNCITAAAGELSRRCPNKSQSIVWYDECMLGYTNRYYPYTETDPGTTLWGEKNVSASDLSSFNRTLFGLLGGLRDQASSSPSPTKFATREADFVGGGGGGDGGSSSSRRVYGLAQCLPDMTGDQCGQCLQNAIGKLVGCCGGKQGARVLLAWCNIRYELFQFYNSTGSSSSPGNKKSASRKIGLIVVLVVISIILLCCISYLLLRKSRKNYKTLLRENFGDESVLLESLQFSLATIEAATRKFSSENKIGKGGFGEVYKGILLDGREIAVKRLSQKSGQGVIEFMNEIKLIAKLQHRNLVILLGFCLEEKEKILIYEFVPNNSLDYFLFHPNKSRLLNWFERYRIIEGIARGVLYLHDHSRLKVIHRDLKPSNVLLDDNMNPKISDFGIARIVATDEEQGSTNRIVGTFGYMSPEYAMHGQFSEKSDVFSFGVIVLETISAKKNARSLISDNDDDLLGYAWRQWRDKTPLEILEQGVRESCNHSEVIKCIQIGLLCVQEKPDDRPTMTKVVSYLSSPLIELPFPEEPKSYKHSGVAQKMVAGESTSGSVLSMNEMSVSISIPR* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0794 665 ProSiteProfiles Gnk2-homologous domain profile. 36 139 IPR002902 -
Lja6g0794 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Lja6g0794 665 SMART serkin_6 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0794 665 Pfam Protein tyrosine and serine/threonine kinase 348 616 IPR001245 GO:0004672|GO:0006468
Lja6g0794 665 Gene3D Phosphorylase Kinase; domain 1 308 420 - -
Lja6g0794 665 CDD STKc_IRAK 351 616 - -
Lja6g0794 665 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 24 665 - -
Lja6g0794 665 Gene3D - 35 139 IPR038408 -
Lja6g0794 665 Gene3D - 148 264 IPR038408 -
Lja6g0794 665 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Lja6g0794 665 SUPERFAMILY Protein kinase-like (PK-like) 329 632 IPR011009 -
Lja6g0794 665 Pfam Salt stress response/antifungal 42 136 IPR002902 -
Lja6g0794 665 Pfam Salt stress response/antifungal 159 260 IPR002902 -
Lja6g0794 665 Gene3D Transferase(Phosphotransferase) domain 1 421 622 - -
Lja6g0794 665 ProSiteProfiles Protein kinase domain profile. 345 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0794 665 ProSiteProfiles Gnk2-homologous domain profile. 144 264 IPR002902 -
Lja6g0794 665 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0794 Lja-Chr6 17742081 17752399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0794 15 665 Receptor kinase-like Gene Family AT4G05200 42.857 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja6g0794 PK_Tyr_Ser-Thr 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0794 - - gsj:114402923 830.861