Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0792 ATGGGTGGTTACTCCACCAATCCCGCCGACTACAAGCTTCTCGAAGAAGTCGGCCACGGCGGCACCGCCACCGTCTTCCGCGCCATCTACCTTCCTTACAACCAAGTCGTTGCTGTCAAAAGCTTCGATCTCGATCGCTGCAACACTGTTAATTTGGATGACATTCGTAGGGAAACTCAGATGCTGAGCTTGATCGACCATCCAAATATTGTGAGGGCTTTCTGTTCATTTGTTGTAGAGCAGTGTCTCTGGGTGGTGATGACATTCATGGACGAGGGTTCATGCTTGCATCTCATGAAAATGGCGTACCCTGACGGGTTTGAAGAGGATGCTATTGGTTCTATTCTCAAAGAAACGCTCAAGGCACTGTGCTACCTTCACCAACAAGGACTTATTCATAGAGATGTTAAGGCTGGGAACATTTTGTTTGATAGTACCGGGGCCGTGAAGCTTGCTGATTTTGGTGTTTCGGCTTCAACTTTTGATGCCGGCGATAGACAGCGTTCTAGGAATACTTTTGTGGGGACTCCTTGCTGGATGGCTCCAGAGGTACTGCAACCGGGAACTGGTTATAATTCCAAGGCTGATATTTGGTCATTTGGAATCACGGCACTGGAGTTGGCTCATGGTCATGCACCATTTTCAAAATATCCTCCAATGAAGGTTCTTCTCATGACCATACAGAATGCCCCACCTGGACTGGATTATGATCGTGATAAAAAGTTTTCTAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTAGTGAAAGATCAAACGAAGAGGCCATCAGCAGAGAAGTTACTGAAACATCCCTTCTTCAAACATGCCAAGCCTCCTGAGCTCTCTGTAAAGAAATTGTTTGCTGACTTACCACCTCTTTGGGATCGTGTAAAAGTTCTCCAGCTTAAAGATGCAGCTCAACTAGCACTTAAGAAAATGCCCTCTGCAGAACAAGAAGCGATATCTCAGAGTGAATACAAGCGAGGAGTTAGTGCATGGAACTTTGATGTTGATGATTTGAAAGCTCAAGCTTCATTGGTGAGGGATGGTGATGATATTTTAGAGAGGACGGAAGAAGATGAAAACAATATTTTCACCTATTACGATGTCGGCACAGCCAATTCCCAATTTGGTGCTGGACATATTAAATCAGAAAAGTTACCACAGGAGAAGATCACATCACTAATAGGTGGTATTGAGATACAACAAACTGAGCAAAGTGATTACTTGAACAAAAAGGAGAAGATTCTTGAAAGTGATCTTGAGGAACCCAACAACATTATTTCAAAGAGAAAAGAATCCATTGCAGAGGCTACAACATCAACTGTAGACAAGGATACAAGTTTGAGCAAAATTAAAGCTCAAACTGTGAAAAATCGTCTAACCCAAAGTGGGCCACTGATTCCAGGCACAGTTTTCAGTCACTCATTGTCGGACAAAGGACGTAGACTTGAAAAGCTTGAGAATGGAAATCAGTTACCAAGTGAGAGAATTAATCGTGAAGTGCGACGATCTCCAAGTTTTAGCGGTCCTTTGATGCTTCCAACTCGAGCTTCGGCAAATAGTTTATCTGCTCCCATAAAGTCCTCTGGAGGATTCAGAGACTCCTTGGATGACAAGTCTAAGGCTAATCTTGTGCAAATTAAAGGGCGATTCTCTGTGACGTCAGAAAACTTAGATCTTGTGAAGGATATTCCTGTAAGTTCAGTTTCACGCCGATCTTCACAGGGGTCACCACTGCGGAAATCTGCCAGTGTTACTGATTGGACGTTGGATTTCAAACAAATGTCAATTGGTCAGTCTCCTAAAGATTCTGCCACTACCAATTTCTCTGCTTCGCTTCTTATGCCTCACCTTCAAAATCTTTTTCAGCAAACATCTACTCAACAGGATCTTATAATGAACCTGTTAGTTAGCTTGCAACCTGCTGAAGCAATTGATATTTCTCAGAATGGAAAGTTGCCACCTTTACCTCACAATTCAGAGACCAATGGAAGTGTTGATCCAGCAGCTTCGGAGAGGGAACGTCTTCTGCTTTTAAAAATTGCAGAGCTTCAAACTCAGATGATCAATTTGACTGATGAACTGACTGCTGAGAAGTTAAAATATGTGCAGTTACAACAACAGCTAACAGCTGTCTACAATCAAGAACATAATGGAGACAGGAGAGAGGAAGTTGCTTGA 2184 0.4304 MGGYSTNPADYKLLEEVGHGGTATVFRAIYLPYNQVVAVKSFDLDRCNTVNLDDIRRETQMLSLIDHPNIVRAFCSFVVEQCLWVVMTFMDEGSCLHLMKMAYPDGFEEDAIGSILKETLKALCYLHQQGLIHRDVKAGNILFDSTGAVKLADFGVSASTFDAGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPSAEKLLKHPFFKHAKPPELSVKKLFADLPPLWDRVKVLQLKDAAQLALKKMPSAEQEAISQSEYKRGVSAWNFDVDDLKAQASLVRDGDDILERTEEDENNIFTYYDVGTANSQFGAGHIKSEKLPQEKITSLIGGIEIQQTEQSDYLNKKEKILESDLEEPNNIISKRKESIAEATTSTVDKDTSLSKIKAQTVKNRLTQSGPLIPGTVFSHSLSDKGRRLEKLENGNQLPSERINREVRRSPSFSGPLMLPTRASANSLSAPIKSSGGFRDSLDDKSKANLVQIKGRFSVTSENLDLVKDIPVSSVSRRSSQGSPLRKSASVTDWTLDFKQMSIGQSPKDSATTNFSASLLMPHLQNLFQQTSTQQDLIMNLLVSLQPAEAIDISQNGKLPPLPHNSETNGSVDPAASERERLLLLKIAELQTQMINLTDELTAEKLKYVQLQQQLTAVYNQEHNGDRREEVA* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0792 727 MobiDBLite consensus disorder prediction 512 529 - -
Lja6g0792 727 SUPERFAMILY Protein kinase-like (PK-like) 10 320 IPR011009 -
Lja6g0792 727 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 719 - -
Lja6g0792 727 MobiDBLite consensus disorder prediction 654 668 - -
Lja6g0792 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lja6g0792 727 SMART serkin_6 11 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0792 727 Gene3D Transferase(Phosphotransferase) domain 1 93 319 - -
Lja6g0792 727 ProSiteProfiles Protein kinase domain profile. 11 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0792 727 Coils Coil 682 709 - -
Lja6g0792 727 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Lja6g0792 727 MobiDBLite consensus disorder prediction 486 536 - -
Lja6g0792 727 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lja6g0792 727 MobiDBLite consensus disorder prediction 649 670 - -
Lja6g0792 727 Pfam Protein kinase domain 11 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0792 727 CDD STKc_OSR1_SPAK 10 273 - -
Lja6g0792 727 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0792 Lja-Chr6 17690206 17700296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0792 3 718 MAP Kinase Kinase Kinase Kinase AT4G24100 62.691 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Lja6g0792 Pkinase 1.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0792 - - gmx:100809903 1079.32