Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0788 ATGGAAGGGCAGAGCAAAGAATTGATGGGTGTTTCATCCTTTGTTTCAACGAGGCAAGAAGCCTCAAACGTGCTTCAGCAGCGTCTCCAAATCATCCTTCAGAACCGTCCTGAGTGGTGGGTGTACGCAATATTCTGGCAAGCCACCACCAGAGACAACAGCAATTCCAATGTGACATTACAATGGGGCGGTGGCTACTTCCATGGCACGAAAGCAAAAGCCAGAGAAGAACGTGAGAGCATTGAATGGTTCTACACGGTGTCACAGACTCGGTCATTTAGCTCGGGGGATGGTGTTATTGGTTGCGCTTTCAGCTCCGGGGTGGATGTCTGGTTGAGTGGGGCGATGAATGAGTCTCAATTAGAAAAGTGTGGTCGAGTTAGAGAAGCTCGCGAGCACGGAATTCAAACTTCAGTTTGCGTTTCCATAGCAAACGGTGTGGTTGAGCTTGGCTCAACAGACACGTTTAAACTCGACCACAACCTGCTGCAAATGGTGAAATCAGTATTTGACCATTTGCAGCCGAACGTGATCGAGTTTGATAAGGGCAAACACAAGGCAAATAATGGGTCTTCCTCAGACTCATCAGATGCTAAGGCTGAGGTTGAGGTTGAGGCAACTTTGGAAAAAAATGCTTCAACGATGTTTCGGCGAGGCGGTCAGTTTTCGGTGAATCATGTTGAGGCTGAAAGGCAGAGACGGGAGAAACTGAATCAGAAATTCTATGCTCTTCGATCTGCTGTTCCAACCGTGTCCAAGATGGACAAAGCGTCCTTGCTTTCTGACGCAGTTTCCTACATCAATGAACTCAAGGCCAAGATTAATTGTTTAGAAAGAGGATTAGAGAACCGTGCTGAGAGTTCTAAACAAGAAACTTCTGAGGATGTCAAAACCGTGGCTGTTGATGTGAAGATTTTGGGGACAGAGGCAATTATTAGTGTTCAGAGCCTGAACGTGAACTACCCAATTGCAAGGTTGATGGATGCTATTAGAGATCTCCGTTTGAAAATTCTCCATGCCACCATGTCGAATGTCAAAGAGATGATGCTGCAAGACGTTGTGGTTAAGGCTCCTCATGGGATGAATGAAGAGGCAATCAAAAATGCCATTACTCAAAGACTCTGA 1125 0.4622 MEGQSKELMGVSSFVSTRQEASNVLQQRLQIILQNRPEWWVYAIFWQATTRDNSNSNVTLQWGGGYFHGTKAKAREERESIEWFYTVSQTRSFSSGDGVIGCAFSSGVDVWLSGAMNESQLEKCGRVREAREHGIQTSVCVSIANGVVELGSTDTFKLDHNLLQMVKSVFDHLQPNVIEFDKGKHKANNGSSSDSSDAKAEVEVEATLEKNASTMFRRGGQFSVNHVEAERQRREKLNQKFYALRSAVPTVSKMDKASLLSDAVSYINELKAKINCLERGLENRAESSKQETSEDVKTVAVDVKILGTEAIISVQSLNVNYPIARLMDAIRDLRLKILHATMSNVKEMMLQDVVVKAPHGMNEEAIKNAITQRL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0788 374 Pfam Helix-loop-helix DNA-binding domain 224 270 IPR011598 GO:0046983
Lja6g0788 374 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 75 170 IPR025610 -
Lja6g0788 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 221 270 IPR011598 GO:0046983
Lja6g0788 374 PANTHER MYC 20 374 IPR045084 GO:0003700|GO:0006355
Lja6g0788 374 SMART finulus 227 276 IPR011598 GO:0046983
Lja6g0788 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 284 IPR036638 GO:0046983
Lja6g0788 374 Coils Coil 267 287 - -
Lja6g0788 374 Gene3D - 221 287 IPR036638 GO:0046983
Lja6g0788 374 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 20 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0788 Lja-Chr6 17624224 17625348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0788 24 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.264 2.34e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g0788 bHLH-MYC_N 3.9e-22 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0788 - K13422 gmx:100777730 373.244