Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0772 ATGAAGGCTGGTTCATCAACGGAAGAACTGGTTGGTGGCGCGAGGAATCGACCTGCTCCTCTGTTTGTGGATGGTCTACTCGAAAATATTACATATTCCATGGTGAGAAAATGCTTCTCAAGGTTTGGTTTGGTTGAGGGTATCTACGTACAAAGGGAGAAGAAGCAAAACAGAAGAACCAAATTTGGATTCGTACGCTATGTCATGAAGGTGGATGCGGATACAGCTTTGAAGGAGCTGAATGGCAGCATACTTAATGGTGCAAGATTATCAGTGGAATATTCAAAATTCCCCCTTAATTCTAAGAGGAATATTTCAGAGAATAGACATTTCCAGAAGATTAATATCTCTGAGAGAGCAGAATGTCCCTCGAGGCAAGAATGGAGACCCAAACATGATTTTGACCCACCTTTGGAGGAAACTTTTAACGCCGAATGCTGTTACTCAACAAAAAAGGAAGATAGGGATAGAGTGCAGAGAATGGCGGTGGCTTCTCCTCGAGGAGTAAGGAATATAGAATTATTGCAGAATTTTCTAAAAGCCAGAGGAGCAGCCTGCACGAAAGTAAAGCCGATGGGGGTCAATGAAGTAGTTCTGGAATTTGTCAATAGAGAGGAGATGCTCTCTTTTCTTCGCAGCGGTGGTGATTTCTTGGCCCATAAATTCGAGTGGATTACAGAGGCTACAAAAATGTCACAACCTATGAGACATTTCTTCTGGGTAAAGCTTAGAAATGTCCCCCTCATTGCTTGGAATGTGGATTTTTCCAGGGAGGTTGCAGGGATATTTGGTTCGTTAATTCAACTTGATGAAGACACTGAGCTACACCGACGAGGACAGAGGTTGGGTGCTTCATTGGGGTAA 864 0.4329 MKAGSSTEELVGGARNRPAPLFVDGLLENITYSMVRKCFSRFGLVEGIYVQREKKQNRRTKFGFVRYVMKVDADTALKELNGSILNGARLSVEYSKFPLNSKRNISENRHFQKINISERAECPSRQEWRPKHDFDPPLEETFNAECCYSTKKEDRDRVQRMAVASPRGVRNIELLQNFLKARGAACTKVKPMGVNEVVLEFVNREEMLSFLRSGGDFLAHKFEWITEATKMSQPMRHFFWVKLRNVPLIAWNVDFSREVAGIFGSLIQLDEDTELHRRGQRLGASLG* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0772 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Lja6g0772 287 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 19 107 - -
Lja6g0772 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Lja6g0772 287 SMART rrm1_1 20 93 IPR000504 GO:0003723
Lja6g0772 287 CDD RRM_SF 21 93 - -
Lja6g0772 287 Gene3D - 6 133 IPR012677 -
Lja6g0772 287 Pfam Domain of unknown function (DUF4283) 187 279 IPR025558 -
Lja6g0772 287 SUPERFAMILY RNA-binding domain, RBD 20 103 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0772 Lja-Chr6 17283322 17284574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0772 21 95 Eukaryotic Initiation Factors Gene Family AT1G49760 36.000 3.02e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0772 - K13195 lja:Lj2g3v0911720.1 246.514