Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0771 ATGGAGGAAGTGACGGTGGCAAGATATTGGTGTCATATGTGCTCTCAAAGGGTCAATCCCATCATGGGAGTGGAGATGAAGTGCCCATTTTGCCAAAGTGGATTTGTTGAAGAAATGGGTAACAACCCCGCCGGTAGTGGTAGCGACCTTCACAACACCCCAGAACCTGATTTTGGATCCGATCGGGCTCTCTCCCTCTGGGCACCGATCTTGCTAGGCATGATGGGAAACCCGCGTCATCGTAGAAGACTGAGCCTGAGACGGTTAGAACTTGATGATGATGATGACAATGATTATGGTAATCGTGATGATGTTGTTGGTGTAGCACGCCATGGTGGAGAAGCTGAATATGATAGAGAGCTTGAGTCCATACTTAGGAGGAGAAGGAGAAGCTCAGCTACCATTCAACAACTGCTCCAAGGCATAAGAGCTGGACTGGCATCTGAATCAAACGAGAATGCTGACAGTGATGACCATGGTCATGCGAGAGAAAGGGAAAGAGAGCGTGTGATCTTGATCAATCCCTTTAATCAGACTATTATTGTTCAAGGCTCCTATGATTCAAACCGGGATCAGGGTGATAATCATGGCCCCATTGGGTCTCTAGGGGACTATTTCATAGGGCCTGGTTTGGATTTGCTGTTGCAGCATTTGGCTGAGAATGATCCCAACAGGCAAGGAACTCCACCGGCACAGAAGGAGGCTGTTGAAGCTCTTCCTACTGTGACCATCAATGATAATTTGCAGTGTTCGGTGTGTTTGGATGATTTTGAAGTGGGTTCTGAAGCTAAAGAGATGCCTTGTAAACATAGGTTTCATAGTGGATGTATCCTTCCCTGGTTGGAGCTTCATAGTTCATGTCCAGTTTGCAGGTTTCAATTGCCAGCAGATGAATCTAAGCAAGACTCTGATGTGTCAAGGAATAGCGGTAGTCAAAGGGAGGGTGAAAATGTTGGACATGAAGACAATGCTGAAGAAGTAGATGATGATGTTGTAGGGAGAAATGGAAGTGGGAGTAGAAGATTCTCATTTCCATGGCCTTTCAGTGGATTGTTCTCCTCATTAAACTCTTCTTCATCTTCTAGCCGCCATGGAAACGGAGATGGTACTCAATCAGAAGACAACAACTGA 1131 0.4607 MEEVTVARYWCHMCSQRVNPIMGVEMKCPFCQSGFVEEMGNNPAGSGSDLHNTPEPDFGSDRALSLWAPILLGMMGNPRHRRRLSLRRLELDDDDDNDYGNRDDVVGVARHGGEAEYDRELESILRRRRRSSATIQQLLQGIRAGLASESNENADSDDHGHARERERERVILINPFNQTIIVQGSYDSNRDQGDNHGPIGSLGDYFIGPGLDLLLQHLAENDPNRQGTPPAQKEAVEALPTVTINDNLQCSVCLDDFEVGSEAKEMPCKHRFHSGCILPWLELHSSCPVCRFQLPADESKQDSDVSRNSGSQREGENVGHEDNAEEVDDDVVGRNGSGSRRFSFPWPFSGLFSSLNSSSSSSRHGNGDGTQSEDNN* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0771 376 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Lja6g0771 376 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 352 - -
Lja6g0771 376 ProSiteProfiles Zinc finger RING-type profile. 250 291 IPR001841 -
Lja6g0771 376 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 352 - -
Lja6g0771 376 SUPERFAMILY RING/U-box 239 298 - -
Lja6g0771 376 Pfam Ring finger domain 249 291 IPR001841 -
Lja6g0771 376 CDD RING-H2_RNF126_like 249 291 - -
Lja6g0771 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 297 IPR013083 -
Lja6g0771 376 MobiDBLite consensus disorder prediction 298 336 - -
Lja6g0771 376 MobiDBLite consensus disorder prediction 298 320 - -
Lja6g0771 376 MobiDBLite consensus disorder prediction 354 376 - -
Lja6g0771 376 SMART ring_2 250 290 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0771 Lja-Chr6 17274715 17277402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0771 114 297 C3H Transcription Factor Family AT1G26800 36.022 1.33e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0771 K11982 - gmx:100784876 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0771 6 17274715 17277402 Lja6g0771 6 17274715 17277402 ECH