Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0768 ATGAGGAACCCGATAGCATCATCATCAACGAACAAGAAGAAGAGCAGTACTACAACTGGTAATGAAAATGGCACGACTGTTACTACTACTCCGTGCTGCAGCAAAGTTGGGTTGAAGAGAGGGCCATGGACACCGGAGGAAGACGAGGTGTTGGCCAGTTTCATAAGGAAAGAAGGCGAAGGTCGCTGGAGAACGCTTCCAAAAAGAGCCGGCCTCCTCCGCTGCGGTAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCTCTGTCAAACGCGGCCAGATCGCCCCCGACGAAGAAGATCTCATCCTCCGCCTTCACCGCCTCCTCGGCAACCGGTGGTCTTTGATAGCGGGAAGAATTCCGGGAAGAACTGATAATGAGATAAAGAACTTCTGGAACACCCATCTCAGCAAGAAGCTTATCAGCCAAGGGATTGATCCAAGAACCCACAAGCCTCTCAACCCAGAACTATCTATTCCCTCTTCTTCCACTACTCCACCACCACCACCACCTTCCAAGCCTCTTCCTGTGATCACAAATCACCAAACACTTCATGAAACTACTACTCATCATCATCTCAATATTGCTAGTGTCAACCAAGAATGTGATGAGGGTCAATATCAATATCAACAACCTCAAGCAGTAGCTGCTGCTGCATATATGGTAGCTAATGATATTCCTGATGATGATGTTCCTTCCATGGGTCATCTACTTGCCAACAACAACAACAACCAGGACTACAATGATATCAATTATTGTTCTGATGATATCTTTTCTTCCTTCCTCAATTCTCTGATCAATGAGGATGCTTTCTCTGCCCAGCGCCACCTGCAATCGGAGCATCATGATGACCTTGCACAGGATCCTGTAACTTCATCAACACCACAAGGTTATAATGGCATTGGTGTTGCATGGGAATTGCCCCTCATGCCTGCTAATTTCAGCCAAAATGAACACAGCCATGAGGTTGATGATCATCACAAATAG 993 0.4753 MRNPIASSSTNKKKSSTTTGNENGTTVTTTPCCSKVGLKRGPWTPEEDEVLASFIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNFWNTHLSKKLISQGIDPRTHKPLNPELSIPSSSTTPPPPPPSKPLPVITNHQTLHETTTHHHLNIASVNQECDEGQYQYQQPQAVAAAAYMVANDIPDDDVPSMGHLLANNNNNQDYNDINYCSDDIFSSFLNSLINEDAFSAQRHLQSEHHDDLAQDPVTSSTPQGYNGIGVAWELPLMPANFSQNEHSHEVDDHHK* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0768 330 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Lja6g0768 330 Pfam Myb-like DNA-binding domain 97 138 IPR001005 -
Lja6g0768 330 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 23 319 - -
Lja6g0768 330 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Lja6g0768 330 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 23 319 - -
Lja6g0768 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Lja6g0768 330 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Lja6g0768 330 CDD SANT 98 138 IPR001005 -
Lja6g0768 330 SMART sant 39 89 IPR001005 -
Lja6g0768 330 SMART sant 92 140 IPR001005 -
Lja6g0768 330 CDD SANT 42 87 IPR001005 -
Lja6g0768 330 MobiDBLite consensus disorder prediction 145 180 - -
Lja6g0768 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Lja6g0768 330 Gene3D - 95 159 - -
Lja6g0768 330 MobiDBLite consensus disorder prediction 279 299 - -
Lja6g0768 330 Gene3D - 37 93 - -
Lja6g0768 330 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
Lja6g0768 330 MobiDBLite consensus disorder prediction 163 178 - -
Lja6g0768 330 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0768 Lja-Chr6 16817283 16818753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0768 18 270 MYB Transcription Factor Family AT3G13540 53.755 1.48e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g0768 Myb_DNA-binding 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0768 K09422 - gmx:100782308 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0768 6 16817283 16818753 Lja6g0768 6 16817283 16818753 ECH