Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0767 ATGAGAGGAAGGAGTTACACTCCATCTCCGCCACCACCACCGCCACGCGGTTACGGCAGAAGAGGCGGCGGTGGCGGAGGGAGAAGCCCCAGCCCTAGAGGCGGAGGCCGCTATGGCCCCCGCCCTCGAGATCTCCCTACCAGCCTTCTCGTTCGTAACCTTCGCCATGATTGCAGGCCTGAAGATCTTCGCAGACCATTTGGTCAATTCGGTCCTCTTAAGGACATTTACCTGCCTAAGGATTACTACACTGGACAACCCCGCGGTTTCGGTTTTGTCCAGTTTGTAGATCCTGCTGATGCCGCTGATGCAAAGTATCATATGGATGGTCAAATTCTTCTCGGTCGTGAGCTGACTGTTGTCTTTGCTGAGGAAAACAGAAAGAAGCCAACTGAGATGAGGCATAGAGAGAGAAGTCGGGGTCGGTCTTATGATCGAAGAAGATCTCCTCCTCGTTATTCTCGTTCACCCCGCTACTCCCGATCTCCACCACCACGCCACAGATCTCGCTCTCGCAGTCGTGACTATTATTCCCCTCCTCCTAAACGCAGGGATTCAAGATCTGTGTCACCTGAGGAGAGAAGGTACAGTCGAGAACGATCGTACACACCACGTAGCAGGGAGAGGTCATACTCACGCTCTCCACCCTATAATGGAGGCTCAAGAAGCCGCAGTCGTAGTCCAGCTAAAGTCGCAGTCCACAGCAGAAGCCCAAGTCCGATCCACGGTGATGTTAGGGAGTCAGCCCGCATTAGGTCCCCTAGTCAGTGA 771 0.5422 MRGRSYTPSPPPPPPRGYGRRGGGGGGRSPSPRGGGRYGPRPRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPKDYYTGQPRGFGFVQFVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPTEMRHRERSRGRSYDRRRSPPRYSRSPRYSRSPPPRHRSRSRSRDYYSPPPKRRDSRSVSPEERRYSRERSYTPRSRERSYSRSPPYNGGSRSRSRSPAKVAVHSRSPSPIHGDVRESARIRSPSQ* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0767 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 240 - -
Lja6g0767 256 MobiDBLite consensus disorder prediction 125 152 - -
Lja6g0767 256 SMART rrm1_1 48 121 IPR000504 GO:0003723
Lja6g0767 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Lja6g0767 256 MobiDBLite consensus disorder prediction 1 18 - -
Lja6g0767 256 SUPERFAMILY RNA-binding domain, RBD 47 152 IPR035979 GO:0003676
Lja6g0767 256 MobiDBLite consensus disorder prediction 125 256 - -
Lja6g0767 256 MobiDBLite consensus disorder prediction 1 46 - -
Lja6g0767 256 MobiDBLite consensus disorder prediction 208 232 - -
Lja6g0767 256 Gene3D - 40 159 IPR012677 -
Lja6g0767 256 MobiDBLite consensus disorder prediction 169 207 - -
Lja6g0767 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Lja6g0767 256 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL33 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0767 Lja-Chr6 16806845 16809478 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0767 47 156 Eukaryotic Initiation Factors Gene Family AT4G34110 30.631 2.67e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0767 K12900 - gmx:100775883 255.758