Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0760 ATGGTGAAGTACTCAAGAGAGCCTGACAATCCCACCAAATCTTGCAAGGCCAGAGGCTCTGACCTTAGAGTTCATTTCAAGAACACTAGGGAAACAGCGCATGCCCTCCGTAAGTTGCCCTTGGCTAAGGCCAAGAGGTATTTGGAGGATGTTCTGGCCCACAAACAGGCCATTCCATTCAGACGCTTCTGCCGTGGTGTTGGGAGGACAGCCCAGGCTAAGAACAGACACTCCAATGGACAAGGACGCTGGCCTGCCAAGTCAGCTAAATTCATCCTAGATTTGCTCAAGAATGCTGAGAGCAATGCTGAAGTTAAGGGTTTGGATGTTGATGCTCTCCACATTTCTCATATCCAAGTCAATCAGGCACAGAAGCAAAGGCGCCGAACATACCGAGCACATGGGAGAATCAACCCTTATATGTCATCTCCTTGTCACATTGAATTGATACTATCTGAAAAGGAAGAGCCTGTGAAGAAAGAGCCTGAGGCCCAGTTGGCAACCAGCAAGAGGGTGGCTTAG 522 0.4904 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHALRKLPLAKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALHISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPEAQLATSKRVA* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0760 173 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lja6g0760 173 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lja6g0760 173 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lja6g0760 173 PANTHER 60S RIBOSOMAL PROTEIN L17 1 169 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lja6g0760 173 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lja6g0760 173 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lja6g0760 173 PANTHER BNAA09G27910D PROTEIN 1 169 - -
Lja6g0760 173 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lja6g0760 173 Gene3D Ribosomal protein L22/L17 1 173 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0760 Lja-Chr6 16581916 16584396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0760 1 167 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 92.216 6.37e-117 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0760 K02880 - sind:105156700 326.635