Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0752 ATGCGATCTTCATGGGCTGATTTGGCTGCGAATTCCGCGGCCGAGAACAACGCACCTTCTTCCGCCACCAACAACTCTCAAGCTCCAACCCGTCCTGCTTATGTGCCTCCGCATCTCCGCAACCGCCCACCATCTCACCACTCTCCGGCGGAATCCTCTGCTCCTCCTCCGGCCGCCGCTCCCCGCTGGGGTGCGCCCAGGGATGATTACCGTTCCTCCGGGCCGCCCCGATGGGGCGGCAACCGGGGCGGAAGGGACCGTGAAGTCAACCCGTTTGACGATGTGGAGGATGTCCCTGAGGAAGCGTTTGGTGACCAGGAGAACACTGGGATAAACTTCGATGCGTATGAGGATATCCCTGTGGAGACTAGCGGCGGGAACGTGCCGCCGCCGGTGAACACGTTTGCGGAGATCGATTTAGGGGATGCGCTGAATGAGAATATTCGCCGCTGCAAGTACACGAGGCCCACGCCGGTGCAGCGGCACGCCATTCCGATTTCCTTGGCTGGGAGGGACCTGATGGCGTGTGCACAGACCGGGTCGGGGAAGACGGCGGCGTTCTGCTTCCCCATCATCAGTGGGATCATGACGGGCCAGCCTGCACAGAGGCCGCCTCGCGGGGTGCGCACGGTGTATCCGCTTGCCCTCGTTCTGTCGCCGACTAGGGAGCTGTCGATGCAGATACACCAAGAGGCTAAGAAGTTCTCATACCAGACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGCGATCTTGAGAGAGGTGTGGACATTCTTGTTGCAACTCCAGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTCTCACTGCAGATGATCCGATATCTGGCCTTAGATGAGGCAGATAGGATGTTGGATATGGGTTTTGAACCACAAATACGGAAGATTGTGGAACAGATGGACATGCCTCCACCAGGTTCCAGACAGACTATGCTGTTCAGTGCCACGTTTCCGAAAGAGATACAGAGACTGGCCGCTGATTTTCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAAAAGGGAGCAGATGCTCTGGAACACTGGTTGTGTCTAAATAACTTTCCTGCAACTACTATTCATGGTGACAGGTCACAACAGGAAAGGGAATTTGCTTTAAGGTCATTTAAGAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCGCATGTTGCCCATGTAGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGTATTGGAAGGACGGGGCGAGCGGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCAAAGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTCTTGCGGTATGCTGCTCGCTCTTCCTTTGGTGGAGGAAGGAACCGTCGATCAGGAGGCCGTTTTGGTGGCCGTGACTTCCGAAGAGAAGGTTCTTTCAGCAGGGGTGGTTCTGATCACTACGGTGCAGGAAACAGCGGTGGTGGATATGGGGCTTCTGGTGGGTATGCTGGAGGATACGGTGGTGGTCCTGGGGTAACCAGTGCATGGGACTGA 1782 0.5309 MRSSWADLAANSAAENNAPSSATNNSQAPTRPAYVPPHLRNRPPSHHSPAESSAPPPAAAPRWGAPRDDYRSSGPPRWGGNRGGRDREVNPFDDVEDVPEEAFGDQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGDALNENIRRCKYTRPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVYPLALVLSPTRELSMQIHQEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGSRQTMLFSATFPKEIQRLAADFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCLNNFPATTIHGDRSQQEREFALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLAKSLADLMQEANQEVPAWLLRYAARSSFGGGRNRRSGGRFGGRDFRREGSFSRGGSDHYGAGNSGGGYGASGGYAGGYGGGPGVTSAWD* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0752 593 MobiDBLite consensus disorder prediction 36 62 - -
Lja6g0752 593 Gene3D - 352 531 IPR027417 -
Lja6g0752 593 CDD SF2_C_DEAD 361 497 - -
Lja6g0752 593 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 527 IPR001650 -
Lja6g0752 593 CDD DEADc_DDX3_DDX4 134 355 IPR044763 GO:0003724|GO:0005524
Lja6g0752 593 MobiDBLite consensus disorder prediction 541 557 - -
Lja6g0752 593 MobiDBLite consensus disorder prediction 1 92 - -
Lja6g0752 593 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 48 563 - -
Lja6g0752 593 Pfam DEAD/DEAH box helicase 157 338 IPR011545 GO:0003676|GO:0005524
Lja6g0752 593 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Lja6g0752 593 Gene3D - 92 351 IPR027417 -
Lja6g0752 593 SMART helicmild6 407 488 IPR001650 -
Lja6g0752 593 SMART ultradead3 152 364 IPR014001 -
Lja6g0752 593 MobiDBLite consensus disorder prediction 1 31 - -
Lja6g0752 593 MobiDBLite consensus disorder prediction 536 562 - -
Lja6g0752 593 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 563 - -
Lja6g0752 593 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 503 IPR027417 -
Lja6g0752 593 Pfam Helicase conserved C-terminal domain 373 488 IPR001650 -
Lja6g0752 593 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 349 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0752 Lja-Chr6 16413042 16418059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0752 122 520 Eukaryotic Initiation Factors Gene Family AT3G19760 31.000 4.92e-62 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0752 K11594 - gmx:100795756 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0752 6 16413042 16418059 Lja6g0752 6 16413042 16418059 ECH