Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0727 ATGGCATTTTTGAACAAGGTTGGAAACGTTTTGAGGCAGGGTGCTGCTCAGAGAAGCCAAGCACCTGTGGCATCCATGCTTAATTACATTCGCTGCATGTCTTCAAGCAAGCTTTTCATTGGAGGCCTTTCTTATGGAGTTGATGATAAGTCTCTTGAGGATGCATTTTCAAGCTTTGGAACGGTTGCAGAGGCAAGGGTTATCGTTGATAGAGATACTGGAAGATCAAGGGGATTTGGATTTGTCAGCTTTGACAGTGAGGAGTCAGCATCTTCTGCACTATCTTCTATGGATGGACAGGATCTTAATGGGCGAAACATTCGCGTGTCCTATGCAAATGATAGACCTGCTGGACCTCGGGGTGGTGGCGGTTATGGTACTGGTGGCGGTTATGGTGATCGTAATTCCGGAGGTGGTTGGTGA 423 0.4704 MAFLNKVGNVLRQGAAQRSQAPVASMLNYIRCMSSSKLFIGGLSYGVDDKSLEDAFSSFGTVAEARVIVDRDTGRSRGFGFVSFDSEESASSALSSMDGQDLNGRNIRVSYANDRPAGPRGGGGYGTGGGYGDRNSGGGW* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0727 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Lja6g0727 140 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3 MITOCHONDRIAL 1 139 - -
Lja6g0727 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Lja6g0727 140 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 139 - -
Lja6g0727 140 MobiDBLite consensus disorder prediction 110 140 - -
Lja6g0727 140 SMART rrm1_1 37 110 IPR000504 GO:0003723
Lja6g0727 140 SUPERFAMILY RNA-binding domain, RBD 33 139 IPR035979 GO:0003676
Lja6g0727 140 Gene3D - 13 140 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0727 Lja-Chr6 15987833 15990035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0727 38 115 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 4.82e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0727 - - gmx:100499841 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0727 6 15987833 15990035 Lja6g0727 6 15987833 15990035 ECH