Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0706 ATGACCAGGAGAAAGGTGAAACTTGCATTCATAGTCAATGACTCCGCAAGGAAGGCAACATACAAGAAAAGGAAGAAGGGTTTGATGAAGAAGGTGGATGAACTAACCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCCCATTCGATCCTCAACCTGAGGTTTGGCCTTCCCAGTGGGGGGTTCAAAATGTGTTGGAAAGGTTGAAGACAATGCCTGAATTGGAGCAGAGCAAAAAGATGATGAACCAAGAGACTTTCCTAAAACAAATGATCTTGAAGGCAAAAGACCAAATGGCAAAACAGAAGAAGGAAAACAGGGAGAAAGAGATGAATTTGCACATGTTTCGGTGCATCAATGCGGGGAAGGTCCTGCCCAACATGACCACGAATGATTTGAATGATCTTGCGTGGGTGATTGATCATAACCTGAAGGAGGTCGACCGAATGTTGGAAAAAATGAACAACACTGTGATTCACCAGGGTCGTTCTTCAATCTTAGCCGCTCCAAGTCCAATCCAACCCCAAATGGCACCAGCACTTACAGTAGCCAAGACCGAAGAAATGACTCTAGTGGATGATGTCCATGGGCTTGCCATGAATAATGCTGACGCCATTCAGAGACAGTGGTATGTGGATTTGATCAATGGTAATTATGGGAATGAGACAATGACATTTGGAGATGCTAATCCCCAAAATGGATCATTTTGGCCCAACCCATAA 729 0.4376 MTRRKVKLAFIVNDSARKATYKKRKKGLMKKVDELTTLCGIEACAIIYSPFDPQPEVWPSQWGVQNVLERLKTMPELEQSKKMMNQETFLKQMILKAKDQMAKQKKENREKEMNLHMFRCINAGKVLPNMTTNDLNDLAWVIDHNLKEVDRMLEKMNNTVIHQGRSSILAAPSPIQPQMAPALTVAKTEEMTLVDDVHGLAMNNADAIQRQWYVDLINGNYGNETMTFGDANPQNGSFWPNP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0706 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lja6g0706 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja6g0706 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja6g0706 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja6g0706 242 Coils Coil 94 114 - -
Lja6g0706 242 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Lja6g0706 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja6g0706 242 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja6g0706 242 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lja6g0706 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 212 - -
Lja6g0706 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 212 - -
Lja6g0706 242 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0706 Lja-Chr6 15668369 15669097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0706 1 173 Type I MADS-box Gene Family AT5G48670 54.335 2.34e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja6g0706 SRF-TF 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0706 - - lja:Lj0g3v0271989.1 442.965