Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0697 ATGGGTTCGGACATTGGCGTCGTCAATGCTTCGTCGTGTGTCCACGAATGGAAGAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTATGCTGCAAGTGCGGATTTATGGAGGAATGGAAGGGTGGCATCCTTGATCAATTATCTTCCTATGAGAGTTCAGTTTTCTGTAATAAATTCCACCGTCAAGAAACTGGCTGGAAGGATTGTAAATTTTGCAACAAGCCTATCCACTGTGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGTATAGCTTGTGTTAGCTGTGTAAATACTTCCCTGCTTAATATGATGAGGAATCATGAACATCCTAATGGGCCTATTTCGTTGGCCCAGACCAGTACAAGGGATCGACATTCTGCTCATTTTGATGGCAGATTGTTTACGGGTAGTGTTGACGAGGGAAATCTTATGCAGTTGTGCAGAGTTGTTGAAGCTAGTGAATCCAGCCTTTGGAATAATAGATCAACACGGGACATTACAAGTATCTCTTCAAATAATATGAAACCATCTGTTCAATCATTAACATTTGCTGCATTAGAAAATAGTAGATCAACACGGGACATGACAAGTATACATGAATCAACTGCACAGCCATCTTTGGGTATGTATTTGGGAAACCCATCAGGGAGCAAATCTGTCCCGCATTCTGCTGGAGAGAATGTAGAAGGACGACTTGAGGGAAAAACATCCCCTCCCTTTCATCAAGGACAAAGATCTCGTCCTATATTGCCCAAACTATTGAAGACCGGGAATGTGGAAACTGATAAAGGCACATTTTCTCAATCACGTGTTGCCCGGCCACCTGCTGAAGGGAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCCAGGATTACCGATCAAGAGCTGGAGCGGTTGTCTGGAGATTTGAAGTCCACTGTGGTGCCATTATTTGAGAAGGTTTTAAGTGCCAGTGATGCTGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTACTATTTCACATTCCGAAGGTCTTCCTCTGCATGTCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTTAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCATGCAGTTATGTGCTGGTGATACTGTAACATTTAGTCGGATAGACCCTGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCGTCAATTTCTATAGATGCACAGGATGCCTCTACATCTGCACTTTCTAATGGCATTTCAGCAAAAGGAACAGACTTTTCTGGTGGAACTGAGAATCTGCCATCGGGAAGTAATTCTACCGATCTTCTCAATTCAACAAAAGGGAACGGGGACTCACAATTAAATGGACATCCAGAAAATTTGCATTTGGGCACTGGAGCTGCTGATTTGCTTAAAACTGAAAATTGTGAGATGACAAAGAATCATTCACTGCAGCAGCAAATTTCAGTTTTGGAGAAGAAGAGGGCTCGCAACATTGGGCCTAAGAGTAAGAGGTTGCTCATTGATAATGAAGATTCTATGGAGTTAAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGCCCACCGCCTAGTGTAAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATATGATGAGCCCCCAGTTTTTGGAAAGAGAACAATATTCAGTGCCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTGCCAGTTGACGCTCTTCTTCCTCCCAAATGGACATGTTCTGAAAATGTTTGGGATACAAGCAGGTCTTCTTGTTCTACACCACAGGAACTGAGATCAGGGGAAGTAGAAAATCTTCTGAAAACCAACAAAGATTCTAAGAAACGACGAGTTGTAGAAAATGGCAAGCCACTCCAAGAACATGAGCCTTCTGGCTTAGATGCTCTTGCCAGTGCAGCAGTCTTTGGAGAAAATTTTGTTGACCCTGCCGAGTCATCAGCTGGAGCCACCACCAAACATCCTCGACACCGTCCTGGCTGCTCTTGTATTGTGTGCATTCAGCCGCCGAGTGGAAAGGGGAGACACAAGCCAACTTGTACTTGCAATGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTTATGCTGCGCAAGAAGAAACGCCGCGAAGCAGATGCTGCTGCTGCTGCATCTGCTGCCCAGAAAGATCATAGTCACCAAATAGATGAGTCAGATACCAATGGAGCACCACAAAGAGATGATACAAGTCATTTAGAAAAAGAGGAAGGACTAAACAAAGGTCAAAGTGAGGTTGGTGAGTCCAGTGCTGGACAGATAGATCTGAATTCTCATCCGAACCGCGAAGACATGCAAATGGATATCACAGGACTCGGCATGTCTAGCCATCATCTTGAAACAAGAAGCAACCCAGTAAGGGAAAATATAGATCAAAATGGTCTAAGAAGCTTCAGTAGTGAACTGCAGAATGGTCATCATTCCTCTTTGCTCACACATTCTAATGGAGAAGGTCAGAGACACTTCTCTGATGAAAGATGTTTTCCATCTAGAGTCTGGAACCAGGAAAGAAGAGATGAAGTATACAATCATCCCAATCAGAGTCAAAACAGTCTTTCTTAA 2697 0.4427 MGSDIGVVNASSCVHEWKKGWPLRSGGFAQLCCKCGFMEEWKGGILDQLSSYESSVFCNKFHRQETGWKDCKFCNKPIHCGCIVSRSLFEYLDFGGIACVSCVNTSLLNMMRNHEHPNGPISLAQTSTRDRHSAHFDGRLFTGSVDEGNLMQLCRVVEASESSLWNNRSTRDITSISSNNMKPSVQSLTFAALENSRSTRDMTSIHESTAQPSLGMYLGNPSGSKSVPHSAGENVEGRLEGKTSPPFHQGQRSRPILPKLLKTGNVETDKGTFSQSRVARPPAEGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPTISHSEGLPLHVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLCAGDTVTFSRIDPGGKLVMGFRKASISIDAQDASTSALSNGISAKGTDFSGGTENLPSGSNSTDLLNSTKGNGDSQLNGHPENLHLGTGAADLLKTENCEMTKNHSLQQQISVLEKKRARNIGPKSKRLLIDNEDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCSENVWDTSRSSCSTPQELRSGEVENLLKTNKDSKKRRVVENGKPLQEHEPSGLDALASAAVFGENFVDPAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRREADAAAAASAAQKDHSHQIDESDTNGAPQRDDTSHLEKEEGLNKGQSEVGESSAGQIDLNSHPNREDMQMDITGLGMSSHHLETRSNPVRENIDQNGLRSFSSELQNGHHSSLLTHSNGEGQRHFSDERCFPSRVWNQERRDEVYNHPNQSQNSLS* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0697 898 MobiDBLite consensus disorder prediction 788 809 - -
Lja6g0697 898 SUPERFAMILY DNA-binding pseudobarrel domain 317 421 IPR015300 -
Lja6g0697 898 MobiDBLite consensus disorder prediction 756 787 - -
Lja6g0697 898 MobiDBLite consensus disorder prediction 737 811 - -
Lja6g0697 898 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 12 850 - -
Lja6g0697 898 Gene3D - 297 422 IPR015300 -
Lja6g0697 898 Pfam CW-type Zinc Finger 588 630 IPR011124 GO:0008270
Lja6g0697 898 MobiDBLite consensus disorder prediction 267 286 - -
Lja6g0697 898 ProSiteProfiles Zinc finger CW-type profile. 583 633 IPR011124 GO:0008270
Lja6g0697 898 MobiDBLite consensus disorder prediction 221 253 - -
Lja6g0697 898 ProSiteProfiles B3 DNA-binding domain profile. 319 420 IPR003340 GO:0003677
Lja6g0697 898 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 12 850 - -
Lja6g0697 898 CDD B3_DNA 317 418 IPR003340 GO:0003677
Lja6g0697 898 MobiDBLite consensus disorder prediction 443 469 - -
Lja6g0697 898 SMART B3_2 319 420 IPR003340 GO:0003677
Lja6g0697 898 Pfam B3 DNA binding domain 319 418 IPR003340 GO:0003677
Lja6g0697 898 Gene3D - 586 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0697 Lja-Chr6 15552151 15562812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0697 1 811 B3 DNA Binding Superfamily AT2G30470 49.393 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja6g0697 B3 2.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0697 - - gmx:100789848 1382.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0697 6 15552151 15562812 Lja6g0697 6 15552151 15562812 ECH
Lja6g0697 6 15552151 15562812 Lja6g0697 6 15552151 15562812 PCT