Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0691 ATGTCGTATGTGCCTCCACACCTGAGAAGCGCGACCTCAACCACCGTCGCCACCACCACCAGACCCTCCTCCTCCGCAACCCTAGACAACCACCACCACACCAAGCTCGCATTCTCCTCCTCACACTCCAACAACAACAACAACAACTCGTCCCTCTCCAATGGCCCTCGCCGCACCTCCGCCCTCCCTGATCCTCTCTTCCCTCTCTGGCAACCCTCCGAACGCGTTTCCCGCATGAATCCCCAGCAGATTGAAGAGGTCCGCATACGGCTTAATCTTGATGTTACTGCTCCATCTGGCTCTCCTGATGCTCCTACACCTATAGAAACGTTTACTGATATGTGTTTGCACCCAAGTATCATGAAGGATATTGCTTATCACGAATACACCAGACCAACTTCTATTCAGGCACAGGCCATGCCGATTGCTCTTAGCGGAAGGGATCTGCTTGGTTGTGCTGAAACTGGTAGCGGGAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGGCGCGGTGATGGTCCCCTGGCATTAGTTTTGGCTCCTACAAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTCAGCAGATCTCTTGAGTCATTTAAAACTGCTATAGTTGTTGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGCAGGAGTTGAAATTGTGGTTGCCACTCCTGGAAGATTTATTGACCACTTACAACAAGGCAACACTTCCCTCTCGAGAATTTCTTTTGTTGTTCTCGATGAGGCCGATAGAATGCTTGATATGGGTTTTGAACCACAGATCAGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTTGAGATTGAAGAATTATCGAAGGAGTACTTAACCAGTCCTGTCCAAGTTAAGGTGGGAAAAGTCAGTAGCCCAACAACTAATGTTTCGCAAAACCTTGTGAAGGTTTCTGAAAATGAAAAGATTGATAGGCTTCTAGGTTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAGTGTGGTCATCCATTCCCATTAACAATTGTGTTTGTTGAGAGAAAGACAAGGTGTGATGATGTTTCTGAAGCATTGGTAGCTCAAGGATTATCTGCTGTTTCTCTTCATGGTGGTCGCACTCAGAGTGAAAGAGAGGCTGCCTTGCGTGATTTTCGGAGTGGCTCTACCAGCATTTTGGTTGCCACTGATGTTGCATCTCGTGGACTGGATGTCACAGGAGTATCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACGGGGCGTGCAGGATCAACCGGCCTATCTACCTCATTTTATACTGATCGTGACATGTTCCTTGTGGCAAATATAAAGAAAGCAATAGCTGATGCTGAATCTGGAAATACTGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGAAAGGAGAAAGAAGCAGCAGCTGCACAAAGAGAGGCAAATATTGTTTTATCCAAACACATTGGATCGGGAGCTGCTTCAGTTAACATTGAAGATAAGTTCAAATTTATGATGACTGCCTCAAACATTAAAGGAGACGGAGCAGCAGATAGTGCCTGGGATGATTAA 1665 0.4589 MSYVPPHLRSATSTTVATTTRPSSSATLDNHHHTKLAFSSSHSNNNNNNSSLSNGPRRTSALPDPLFPLWQPSERVSRMNPQQIEEVRIRLNLDVTAPSGSPDAPTPIETFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESFKTAIVVGGTNIEKQRSELRAGVEIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREIMRNLPEKHQTLLFSATMPVEIEELSKEYLTSPVQVKVGKVSSPTTNVSQNLVKVSENEKIDRLLGLLVEEASQAEKCGHPFPLTIVFVERKTRCDDVSEALVAQGLSAVSLHGGRTQSEREAALRDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLSTSFYTDRDMFLVANIKKAIADAESGNTVAFATGKVARRKEKEAAAAQREANIVLSKHIGSGAASVNIEDKFKFMMTASNIKGDGAADSAWDD* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0691 554 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 140 316 IPR014001 -
Lja6g0691 554 Pfam DEAD/DEAH box helicase 133 304 IPR011545 GO:0003676|GO:0005524
Lja6g0691 554 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 16 519 - -
Lja6g0691 554 CDD SF2_C_DEAD 328 466 - -
Lja6g0691 554 Gene3D - 70 320 IPR027417 -
Lja6g0691 554 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 262 270 IPR000629 -
Lja6g0691 554 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 476 IPR027417 -
Lja6g0691 554 SMART ultradead3 128 331 IPR014001 -
Lja6g0691 554 CDD DEADc 120 317 - -
Lja6g0691 554 MobiDBLite consensus disorder prediction 1 58 - -
Lja6g0691 554 Pfam Helicase conserved C-terminal domain 359 457 IPR001650 -
Lja6g0691 554 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 109 137 IPR014014 GO:0003724
Lja6g0691 554 Coils Coil 498 518 - -
Lja6g0691 554 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 340 498 IPR001650 -
Lja6g0691 554 SMART helicmild6 376 457 IPR001650 -
Lja6g0691 554 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 16 519 - -
Lja6g0691 554 MobiDBLite consensus disorder prediction 1 66 - -
Lja6g0691 554 Gene3D - 322 516 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0691 Lja-Chr6 15456559 15463712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0691 109 479 Eukaryotic Initiation Factors Gene Family AT1G72730 35.829 8.85e-71 231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0691 6 15456559 15463712 Lja6g0691 6 15456559 15463712 ECH