Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0687 ATGTCCGTACAATCAACACTGAAGCTCCACCATCCCAAACAATCCACTGCAAGTTCCCATTTTGAGGGTGACCCACCATGCAAATCCACCGCCAAAACCCAAAACCGGAAGAAGCTCCTCCGTATCATTCTCACCGACCACGACGCCACCGACTCTGACTCTGACTCTTCCGGCGACGATAAACCGCCACAAAACCCATCAAAGCCTCCAAGAGTGAAGAAGAAAATCACCCAAATCAACATGCATCTTCCTCCCTTCTCAGATTCCTCAACCCCATCACCTTCTCCTTCTTCATCTTCCAACCCTGACCCGACCCGTTTCAAGAGACCCAGAAAATCCCCTGCCCGTGTCTCTACCTCTCGCTGCCGGAGCAAATTTGTGGGAGTTCGCCAGAGACCCTGGGGCCGGTGGATCGCTGAGATCCGAGACCCGACCCGTTATGGGAAACGGGTCTGGCTCGGGACGTTCGACACGGCGGAGGAAGCCGCTGCTGCCTACGATGAAGCCGCCTTGAAGTTTAAGGGCCCTAATGCCGTCACCAACTTTGCGTCTCCGACGTCTGTTCTGGCCTACTACGACGGTGACTCGACGGCGTTTGACGGTTTCCGTCATGGCGCGGTGGATGCTTTCGGGTTCGATATCGACGCGCCGTTAAGTTTGACGGACGTTAACTCGGTGCTGACTAGTCAGCGGTTTGGGAAGGACGAGTTCAGCGAGTTGAACCCGGACGAGTTCTTGACCTGA 744 0.5524 MSVQSTLKLHHPKQSTASSHFEGDPPCKSTAKTQNRKKLLRIILTDHDATDSDSDSSGDDKPPQNPSKPPRVKKKITQINMHLPPFSDSSTPSPSPSSSSNPDPTRFKRPRKSPARVSTSRCRSKFVGVRQRPWGRWIAEIRDPTRYGKRVWLGTFDTAEEAAAAYDEAALKFKGPNAVTNFASPTSVLAYYDGDSTAFDGFRHGAVDAFGFDIDAPLSLTDVNSVLTSQRFGKDEFSELNPDEFLT* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0687 247 MobiDBLite consensus disorder prediction 1 121 - -
Lja6g0687 247 CDD AP2 124 183 IPR001471 GO:0003700|GO:0006355
Lja6g0687 247 MobiDBLite consensus disorder prediction 82 104 - -
Lja6g0687 247 MobiDBLite consensus disorder prediction 1 33 - -
Lja6g0687 247 ProSiteProfiles AP2/ERF domain profile. 125 183 IPR001471 GO:0003700|GO:0006355
Lja6g0687 247 Pfam AP2 domain 124 175 IPR001471 GO:0003700|GO:0006355
Lja6g0687 247 SMART rav1_2 125 189 IPR001471 GO:0003700|GO:0006355
Lja6g0687 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 16 187 - -
Lja6g0687 247 MobiDBLite consensus disorder prediction 39 58 - -
Lja6g0687 247 PIRSF PTI6 182 247 IPR017392 GO:0003700
Lja6g0687 247 PIRSF PTI6 7 183 IPR017392 GO:0003700
Lja6g0687 247 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 187 - -
Lja6g0687 247 SUPERFAMILY DNA-binding domain 124 183 IPR016177 GO:0003677
Lja6g0687 247 Gene3D AP2/ERF domain 124 184 IPR036955 GO:0003700|GO:0006355
Lja6g0687 247 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Lja6g0687 247 PRINTS Ethylene responsive element binding protein signature 126 137 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0687 Lja-Chr6 15396957 15398310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0687 38 182 AP2-EREBP Transcription Factor Family AT4G27950 41.611 8.72e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja6g0687 AP2 4.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0687 K13434 - gmx:102660028 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0687 6 15396957 15398310 Lja6g0687 6 15396957 15398310 ECH
Lja6g0687 6 15396957 15398310 Lja6g0687 6 15396957 15398310 PCT