Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0680 ATGACGCAAGCCCACACGCACACACCAAAAAACGCGCCATTGCAAAGGTATATATACCACCACCTCCCTCTTCACCTTCCCACCATTTCCATCCCATTTTCAACAACCACAACCGCCATGGGAAGAAGACCGGCGAGGTGTTACCGGCAGATAAAGAACAAACCATACCCGAAATCCCGCTTCTGCCGCGGCGTCCCGGACCCAAAGATCCGAATCTACGACGTCGGGATGAAGAAGAAAGGCGTAGACGAGTTCCCCTTCTGCGTCCACCTCGTCTCATGGGAGAAGGAGAATGTCTCCAGTGAAGCACTCGAGGCGGCGCGGATTGCCTGCAACAAGTACATGGCCAAGTTCGCCGGAAAAGACGCGTTCCACCTCCGCGTGAGGGTGCATCCCTTCCACGTGCTCCGCATCAACAAGATGCTATCGTGCGCAGGTGCTGACAGGTTGCAGACTGGGATGAGAGGCGCGTTTGGGAAACCGCAGGGGACTTGTGCGAGGGTTAGTATTGGGCAGGTGCTGCTTTCAGTGAGGTGTAAGGATGGGAATGCGGTTCATGCTCAGGAGGCGCTGCGTCGCGCCAAGTTCAAGTTTCCTGGTCGCCAGAAAATTATTGTTAGCAGAAAGTGGGGATTTACTAAGTTGAGCAGAAGTGATTACTTGAGGTTGAAGTCTGAGAACAGAATTGTGGCTGATGGGGTCAATTGCAAGGTTCTTGGGTGCCATGGACCTTTGGCGAATCGGGCGCCCGGAAGAGCTTTCTTGCAAGCTGCGGCTTAG 780 0.5423 MTQAHTHTPKNAPLQRYIYHHLPLHLPTISIPFSTTTTAMGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNAVHAQEALRRAKFKFPGRQKIIVSRKWGFTKLSRSDYLRLKSENRIVADGVNCKVLGCHGPLANRAPGRAFLQAAA* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0680 259 SUPERFAMILY Ribosomal protein L16p/L10e 43 212 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lja6g0680 259 TIGRFAM uL16_euk_arch: ribosomal protein uL16 40 213 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lja6g0680 259 ProSitePatterns Ribosomal protein L10e signature. 147 168 IPR018255 GO:0003735|GO:0005840|GO:0006412
Lja6g0680 259 Pfam Ribosomal protein L16p/L10e 51 205 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lja6g0680 259 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 40 258 - -
Lja6g0680 259 PANTHER 60S RIBOSOMAL PROTEIN L10 40 258 IPR001197 GO:0003735|GO:0005840|GO:0006412
Lja6g0680 259 CDD Ribosomal_L16_L10e 80 205 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lja6g0680 259 Gene3D Ribosomal protein L10e/L16 40 256 IPR036920 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0680 Lja-Chr6 15328637 15330139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0680 40 259 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 85.000 3.20e-141 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0680 K02866 - cit:102625379 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0680 6 15328637 15330139 Lja6g0680 6 15328637 15330139 ECH