Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0670 ATGGATATGAGGGTGGCAAAGAGTGAGAGAACTGAACGACTGGGTGAGATTTGCAAATTCTGGCTGCAGGGGAGATGCAACAGAAACCCTTGCAGTTTCTGGCATGGAGAAACACCACCGCCACCGCAATCTGCTGGTTATCGTCATACAAAGACTTCATCTGAGAGCGTCCCTTACTATAACTCCAAGGCCGTGTTGATTAGTAAGAGCAGAGTTGGATCCGGTATCGCTGAGCCAGTTCAGAAGCCGTTACTAAGTAGATGCAATGCTAGGACTCCCTCTGAGAATAACCCTAAGCATAACTCCAAGGCGGTGTTGAATACAAAAAGTGGACAAGGGACATGTATTCCTGAAGCCTCTCAGAAGCCGTCACTGAGTATATGCAAATATTGGGTCACTGGCAACTGCACATATGGTGATCAGTGTCGGAATTTACATTCGTGGCACAATGGTGATGGGATATCTACATTAGTAAAACTTCATGAACACAAGAAGACTGTCACTGGGATTGCATTTCCAGCTGGATCAGACAAACTTTACTCTGGCAGCACTGATGGGACAGTTCGTACATGGGACTGCCATACTGGTCAATGTGCTAATGTAACAAATCTCGGTGCTGAAGTGGCCTCTTTAATCTGTGAGGGCCCATGGATTTTTGTTGGCCTGCTGAATGCGGTCAAGGCTTGGCATATTCCGACTGCTTCAGAGTTTACTCTTCTTGGACCTAAGGGGCGAGTCCTTGCCATGATTGTTGGCAATGATACACTTTTTGCTGCAGCAGAGGATGGTGTAATCTCTGCATGGAGAGGAAGCTCTGATGCCAACTCCCCTTTTGAACTGGTTGCATCACTCAGTGGCCACACTAAAGCTGTGTCTTGCCTGACTGTTGGTGTCAATAGGCTTTACTCAGGGTCAATGGACCAAAGCATTAAGGTTTGGGACCTTGATACTTTAGAGTGTTTAATGACACTCAATGGTCATACTGGGGAAGTTACATCACTTATTTGTTGGAGCGATTTTCTGTTATCTGGGGCATCTGACTGCACTATTAAGATCTGGGTTGCCACAGAAGAGGGACCTTTGAAGGTGACATATACGCACACTCTAGAAAATGGTGTTGTTGCACTTAATGGAATGACTGATGCAGAAGGCAAGCATGTATTGTGTTGCTCGTCCAGAGACAATTCTGTTCGCTTGTATGAATTGCCACCATTTTCAGAGAGGGGTAGATTATTTGCAAGAAAAGAAATCCGATCAATTGAGGTTGGTCCTGGTGGGCTCTTCTTCACTGGTGATGGAACTGGTTTAGTGATGGTGTGGAAATGGTTGGAAGAGACTAAGGTGGCAGCATCTTCTTGA 1359 0.4584 MDMRVAKSERTERLGEICKFWLQGRCNRNPCSFWHGETPPPPQSAGYRHTKTSSESVPYYNSKAVLISKSRVGSGIAEPVQKPLLSRCNARTPSENNPKHNSKAVLNTKSGQGTCIPEASQKPSLSICKYWVTGNCTYGDQCRNLHSWHNGDGISTLVKLHEHKKTVTGIAFPAGSDKLYSGSTDGTVRTWDCHTGQCANVTNLGAEVASLICEGPWIFVGLLNAVKAWHIPTASEFTLLGPKGRVLAMIVGNDTLFAAAEDGVISAWRGSSDANSPFELVASLSGHTKAVSCLTVGVNRLYSGSMDQSIKVWDLDTLECLMTLNGHTGEVTSLICWSDFLLSGASDCTIKIWVATEEGPLKVTYTHTLENGVVALNGMTDAEGKHVLCCSSRDNSVRLYELPPFSERGRLFARKEIRSIEVGPGGLFFTGDGTGLVMVWKWLEETKVAASS* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0670 452 Pfam Zinc finger domain 128 146 - -
Lja6g0670 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 353 IPR001680 GO:0005515
Lja6g0670 452 Pfam RNA-binding, Nab2-type zinc finger 17 36 - -
Lja6g0670 452 SUPERFAMILY CCCH zinc finger 124 147 IPR036855 GO:0046872
Lja6g0670 452 Pfam WD domain, G-beta repeat 319 353 IPR001680 GO:0005515
Lja6g0670 452 Pfam WD domain, G-beta repeat 159 192 IPR001680 GO:0005515
Lja6g0670 452 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Lja6g0670 452 ProSiteProfiles Zinc finger C3H1-type profile. 12 38 IPR000571 GO:0046872
Lja6g0670 452 SUPERFAMILY WD40 repeat-like 155 448 IPR036322 GO:0005515
Lja6g0670 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 160 201 IPR001680 GO:0005515
Lja6g0670 452 SMART c3hfinal6 122 148 IPR000571 GO:0046872
Lja6g0670 452 SMART c3hfinal6 13 37 IPR000571 GO:0046872
Lja6g0670 452 ProSiteProfiles Zinc finger C3H1-type profile. 122 149 IPR000571 GO:0046872
Lja6g0670 452 PANTHER - 11 452 IPR044715 -
Lja6g0670 452 ProSitePatterns Trp-Asp (WD) repeats signature. 301 315 IPR019775 -
Lja6g0670 452 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 323 IPR001680 GO:0005515
Lja6g0670 452 Gene3D - 275 452 IPR015943 GO:0005515
Lja6g0670 452 Gene3D - 128 274 IPR015943 GO:0005515
Lja6g0670 452 PRINTS G protein beta WD-40 repeat signature 179 193 IPR020472 -
Lja6g0670 452 PRINTS G protein beta WD-40 repeat signature 301 315 IPR020472 -
Lja6g0670 452 PRINTS G protein beta WD-40 repeat signature 341 355 IPR020472 -
Lja6g0670 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 160 192 - -
Lja6g0670 452 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 11 452 - -
Lja6g0670 452 SMART WD40_4 232 269 IPR001680 GO:0005515
Lja6g0670 452 SMART WD40_4 317 354 IPR001680 GO:0005515
Lja6g0670 452 SMART WD40_4 358 401 IPR001680 GO:0005515
Lja6g0670 452 SMART WD40_4 404 441 IPR001680 GO:0005515
Lja6g0670 452 SMART WD40_4 153 192 IPR001680 GO:0005515
Lja6g0670 452 SMART WD40_4 277 314 IPR001680 GO:0005515
Lja6g0670 452 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0670 Lja-Chr6 15208211 15211048 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0670 159 402 Acyl Lipid Metabolism Gene Families AT3G18860 25.714 7.43e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja6g0670 WD40 7.7e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0670 - - gmx:100787799 557.37