Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0667 ATGGACGCCATGTCCTCTGTTCTCAAGAACTACTTTGGCTTTTCGGATTTTCGGCCTTACCAGAAAGACATTATTGAGAAAATTATTGAGAAAAGGGATTGTGTGGTGGTCATGGCCACTGGCAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCATTGGTTGTTAAAAAGACTGGGATTGTTGTAAGCCCTCTCATATCATTGATGCAAGACCAGGTAATGGCTTTGAAGGAGCGGGGTATCAAAGCTGAGTATCTTGGAAGTGCTCAGAAGGATTTCACTGTTCAGACTAAAGCTGAGCATGGTCAATTTGACATTCTTTTCATGACTCCTGAGAAGGCATGCACAATTTCAACCAGTTTTTGGTCCAATTTGCTAAAGGCAGGCATTAGTCTTTTTGCTGTTGATGAAGCACATTGCATATCAGAATGGGGGCATGATTTTAGGGTGGAGTACAAGAACTTAGACAAATTACGCAGTGTTTTGGTAGAAGTTCCTTTTGTTGGTCTAACTGCCACTGCTACTGAAAAGGTTCGATTTGACATCATCAAATCTCTGAAGATGAATAATCCTTATGTTTTAGTTGGTTCATTTGATCGCGCAAATCTTTTCTATGGTGTAAAGCCATTTAGCCGTGGACAATCTTTTATTGATGAGCTTGTGCGAGAAATTTCAAAAGAAGTTGATAGTGGTACTTCAACTATAATTTACTGCACAACAATCAAGGATGTAGAGCAGATATCCAAGTCACTTACGGAAGCAGGTATTAAGGCTGGAATGTACCATGGACAAATGAATGGAAAATCTCGAGAGGAATCTCACAGATTATTTGTTAGAGATGAAGTGCAAATCATGGTGGCTACAATTGCTTTTGGCATGGGCATAGATAAACCTAACATAAGAAAAGTGATTCACTATGGCTGCCCTAAGAGTATAGAATCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATACCTTCTGTTTGTTGGCTTTACTACACAAGAGGTGACTTTGCAAAAGGCGAATTCTATTGTGGAGATATAAAATCAGAAATCCAAAGAAGAGCTATTATGGAGTCATTGCGGGCTGCGGAACACTATTGTGTGCTGCCAACTTGCAGAAGAAAGTTCCTTCTTGAATACTTTGGGGAAAATTTTCCGGCTGATAGATGTGGAAACTGTGATAACTGCTTAGTCGCAAAGAAGGAGCGTGACCTGTCGAGAGAAGTATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGCAATTGGGGCCTTAATATCCCCATTGACATTCTGCGTGGTTCTCGAGCCAAGAAAATTATTGATGCTCAGTATGACAAGCTTCCACTTCATGGACTTGGGAAAACTTACCCAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTGCCAAGGTTATTTGAAGGAGACTTTCATTGACATATACAGGGCTATAAGTGTCAGTTCAAAAGGAGAGGAATTTTTGGCCTCGTGTAGACCAGACTATCAACCTCCTTTAATTTTGTCATTGACTACTGAAATGCTTGGAGAGGAGGAAAATGGAAGCACAGAAGATTTCAAAATTTTAGCTACTTCAGAATCAGGTGGTTTTTCAGAGGCTGAGGGTCAGCTCCTCCAAATGCTTTTAGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACTGCTCCTTATGCTCTATGTGGTGATCAAACGATCAAGAAAATTGCTTTGACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTGCTAACCAGATATGGAGATCATTTTCTTGGAGTTATTCAGAAACTGTCACAAGGATTAAACCTATCATTGGATGGCGAAGCAAGTATGCAAACAAATGAAGTACGTAAAGTATCTCCAGTAAATATCAACAAATCAAGAAAATTGACACCGGCAAAGTTTGAAGCATGGAAAATGTGGCATGAGGATGGTCTTTCTATTGAGAAGATTGCTAACTTTCCAGGTAGATCAGCTCCTATAAAAGAACAAACCGTTGCTGAATATCTGCTGGAAGCTGCCCAAGAAGGATTGCCTTTTGATTGGACTAGATTCTGTGAGATGATAGGATTGACACAAGAGATCATGTCAGAAATTCAGGGCGCTATTTTAAAGGTTGGATCTGAAGATAAGCTGAAGCCTATAAAGAATGAATTGCCAGAAGATATAACTTATCAGCACATTAAGGCTTATTTGACAATGCGAAGCTGTGGAGGTCCCCAGTCTGGGAAAGATGGTGAAGCTGCAAATAATGCATCAAATGGTGAAGCTGTAAATAATGCAGCAAATTTGTCAGAGCCTCATTTAGAAACATGCTACAAGGAAAGGCCTCTTGAAGCTGACATCACTGGCAAAAGTTTGAAGGAAAATTTTGACCTTGAAATTGATGAAGTTGTACTTTCTGGACCTGTCAATGGTTCCACAGTACAGAAGCTTCCATTAGCCTGTGAGGGGGAATTCACAGCCAAACGACAAAAAGTAGCAGAGGAAGTGAAGTCAGTTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGCTGAAGAACCTTGATGAAGGGGCTACTTTGATTGATGTTTTGGAGCACTTCAATGGATCCGATGAAGATTCTGTGGTTGAAGTGCTAAATTGCCTTGAGTGTGACTTTGCAATATATAAGAAAGGTAACATGTATAGGGCTATGTAA 2739 0.4042 MDAMSSVLKNYFGFSDFRPYQKDIIEKIIEKRDCVVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKERGIKAEYLGSAQKDFTVQTKAEHGQFDILFMTPEKACTISTSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKNLDKLRSVLVEVPFVGLTATATEKVRFDIIKSLKMNNPYVLVGSFDRANLFYGVKPFSRGQSFIDELVREISKEVDSGTSTIIYCTTIKDVEQISKSLTEAGIKAGMYHGQMNGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKSIESYYQESGRCGRDGIPSVCWLYYTRGDFAKGEFYCGDIKSEIQRRAIMESLRAAEHYCVLPTCRRKFLLEYFGENFPADRCGNCDNCLVAKKERDLSREVFLLMACIHSCKGNWGLNIPIDILRGSRAKKIIDAQYDKLPLHGLGKTYPANWWKALGHQLICQGYLKETFIDIYRAISVSSKGEEFLASCRPDYQPPLILSLTTEMLGEEENGSTEDFKILATSESGGFSEAEGQLLQMLLEERLKLARSVGTAPYALCGDQTIKKIALTRPSTKARLANIDGVNQHLLTRYGDHFLGVIQKLSQGLNLSLDGEASMQTNEVRKVSPVNINKSRKLTPAKFEAWKMWHEDGLSIEKIANFPGRSAPIKEQTVAEYLLEAAQEGLPFDWTRFCEMIGLTQEIMSEIQGAILKVGSEDKLKPIKNELPEDITYQHIKAYLTMRSCGGPQSGKDGEAANNASNGEAVNNAANLSEPHLETCYKERPLEADITGKSLKENFDLEIDEVVLSGPVNGSTVQKLPLACEGEFTAKRQKVAEEVKSVKLKATESSVVEWLKNLDEGATLIDVLEHFNGSDEDSVVEVLNCLECDFAIYKKGNMYRAM* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0667 912 Pfam Helicase conserved C-terminal domain 219 325 IPR001650 -
Lja6g0667 912 SMART ultradead3 13 208 IPR014001 -
Lja6g0667 912 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 458 IPR004589 GO:0004386|GO:0006310
Lja6g0667 912 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Lja6g0667 912 ProSiteProfiles HRDC domain profile. 542 622 IPR002121 GO:0003676
Lja6g0667 912 SMART helicmild6 245 326 IPR001650 -
Lja6g0667 912 Gene3D - 200 402 IPR027417 -
Lja6g0667 912 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Lja6g0667 912 Gene3D - 1 198 IPR027417 -
Lja6g0667 912 PANTHER DNA HELICASE RECQ FAMILY MEMBER 5 740 - -
Lja6g0667 912 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lja6g0667 912 Pfam Helix-turn-helix domain 654 750 IPR029491 -
Lja6g0667 912 SMART hrdc7 542 622 IPR002121 GO:0003676
Lja6g0667 912 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 380 IPR001650 -
Lja6g0667 912 Pfam RQC domain 404 500 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lja6g0667 912 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Lja6g0667 912 SUPERFAMILY HRDC-like 541 617 IPR010997 GO:0000166|GO:0044237
Lja6g0667 912 SUPERFAMILY "Winged helix" DNA-binding domain 398 501 IPR036390 -
Lja6g0667 912 Pfam RecQ zinc-binding 339 400 IPR032284 -
Lja6g0667 912 Gene3D - 403 526 IPR036388 -
Lja6g0667 912 CDD DEXHc_RecQ 6 199 - -
Lja6g0667 912 CDD SF2_C_RecQ 200 335 - -
Lja6g0667 912 Pfam HRDC domain 546 612 IPR002121 GO:0003676
Lja6g0667 912 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 5 740 - -
Lja6g0667 912 Gene3D HRDC domain 541 621 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0667 Lja-Chr6 15173231 15184349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0667 12 340 Eukaryotic Initiation Factors Gene Family AT3G19760 21.802 2.72e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0667 K03654 - gmx:100797777 1477.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0667 6 15173231 15184349 Lja6g0667 6 15173231 15184349 ECH