Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0654 ATGGCAATGGCAATGTCGGAGAAGAAGGTACCCTTTATAGAACCGCCGGAAGAACTCCGGTGCCACCGCAACGACGGTAAATCATGGCGGTGCCATCACTGGAGGATTCACGACAAGACCTTCTGCGAGGTGCATTACCTTTCCATGAGAAAACAAAATACAAAGAAACCTGAAGAAATCGAAGAGAACGAACGAGCTGTTCCGGCCAAGCGCCGGAGGAAGAAACCGAAGAGACTTCGCGAGGAAGAGGAGGAAAAAGCTCAGAGAACCGAAAGGAACAAGAAGAAGGTGAAGCTCAGAGCTGAACGAAAATGTCCAAAGGAGGAGGAGGAAGACTCTGAAGCAACGGTGGTACTAGACAGGAAGGTCAGTGTCAGAGAGAAGATCAAGAGATTGCTTCAATCGATTGAACGTGATGATGGTGATGATGAAGAAGAAGAAGCAATCACCAGAAGGAGAAGCTCTTCCTCCAAAAATGAGAAATCGAGTGTTCCTCGGTCCTGTCATCAATGCCTGAGAATTGATAATAGGGTTGTTCGCTGTCAAAACTGCAATGCCAAGCGTTTTTGCGTGCCCTGTATTCGGAGATGGTATCCGCAAATGTCTGAGGAGGCTATAGCAGAATCTTGTCCATATTGTCGAGGATATTGTAACTGCAAGACATGTTTATGCAGAAAAGTCGCAGCTATGGATTCTAAAAATGTAGGACTGCCTCTAAATCAAGATGAAAAGATTCAATATTTAAAGCATTTGGTGCGATCATTGTATCCTTTTCTGGAACAATTTAATCATGAGCAGCAGTTGGAGTTGGAGATGGAAGCAAAAATTAGAGGGTTATTGCTTTCAGATTTAGAAGTAAACCAAATTGTTTGTTCTGCATATGAACGTATATATTGCAACAATTGCAAAACCTCTATAATTGATTTTCATAGGAGCTGCCCAAATTGTTCGTATGATCTTTGCATTACATGTTGCCGGGAAATTCGTGGCAGTTTTTTGCAAGAGGAATTAGTCGAGCAGTACATTGATGCTTCTAATGCTCACGTGCATACAGGAGAACCTTTAAATCTGCACTCATTCAAGAAAGAATCAGCAGAAATTTGTCTTGGTTCGGGCTCTAAGAACTCTGTGGGACCTAAGCATGTATGGAGGGCAATGAAAAATGGTGCCATTCCTTGTCCACCAAAGGATAATGATGGTTGTGGATATGAATATCTTGTGCTAAAATGCATACATTCCCAAAATTGGATTTCAGAATTAAAGGAAAAAGTTAAAAGTTTAGTCAAAGTTCATGGACTAGAAGACCTTGCTGCAGTTTCTGCACAGTGTACCTTGTGCTTCAATTCACATGATGAGAGTGGATCCATTAACAAGAATTTGCGGAAAGCTGCCTCTCGAGAAGACTCAAAAGACAACTATTTGTATTGTCCTTCTGCTAGTGATGCTAAATGTGGGGATCTTGAACATTTCCAGGGCCATTGGATTAGAGGAGAACCAGTTATTGTTAGGAACTCTCTTGAGTTAACATCTGGCTTGAGTTGGCAGCCAATGGTAATGTGGCGTGCAATGCGGGAATTGACTTACCATCATTCCAAACATTTGAATGTGAAAGCTATTGACTGCCTAGATTGGTGTGAGGTTGAAATAAATATCCATAAATTTTTCAAGGGATACTCAGAGGGTCGTACTCATCGCGACTCATGGCCTGAGGTGCTCAAACTCAAAGATTGGCCCCCGTCTAATTTATTTGAGCGGAAGTTACCACGTCACGGTATGGAGTTTATTAGTGCCTTACCTTACAAAGAGTATACACATCCTCGCTCTGGTTTTCTTAACATGGTCACAAAGCTGCCGAAGAAATCTTTGAAACCTGACTTGGGGCCGAAGACATATATAGCATATGGCTTTGCTGAAGAGCTTGGACGTGGAGACTCTGTGACCAAGCTTCATTGTGACATGTCAGATGCGGAAGTGACCCTCACGTCTGAACATCGTACCAAAATAGAGAGGTTGAAACAACAGTTTGCTGCTGAAGACACAAGTGAACCTTTTCAGGTTCTGCAGGTAAAAAAAGATCGTAAGGGGGAAAATGTTGGGGATGTGACAAAAGCTAACACTGTCATCTCCAATGTGCATAATTTAACAAATGAGGCTCTGCAGCAGGATGCAGGATGTATTAGTCAACCTGTGCATTCTGAAAGTTTGCATAGTGGACAAGAAGTAGCCAAGGGAGGTGCCATCTGGGATATCTTTCGGAGACAAGATATTCCCAAGCTTGAGGAATACCTTAGAAATCATTGTAGGGAATTCAGGCATCTTCATTGTTCTCGAGTGGAGAAGGTTTTTCATCCCATTCATGATCAAGTTTTCTATCTAAATTGTCATCATAAAAGGAAGCTGAAGGAAGAATTTGGAATTGAACCTTGGACTTTTATACAAAACCTTGGTGAGGCAGTCTTTATACCTGCTGGGTGCCCCCATCAAGTTAGGAACATAAAGTCATGCATAAAGGTTGCTTTAGATTTTGTCTCTCCGGAAAATATCAATGAATGTATTCGTCTAACTGAGGAATTTCGCACTCTTCCACCAATCCATAGAGCAAAGGAAGATAAACTTGGGGTGAAGAAAATGTGTCTCCATGCATTGAGTCAGGCTGCAGACGATTTGGAGAATCTCGTGGAATGA 2685 0.4223 MAMAMSEKKVPFIEPPEELRCHRNDGKSWRCHHWRIHDKTFCEVHYLSMRKQNTKKPEEIEENERAVPAKRRRKKPKRLREEEEEKAQRTERNKKKVKLRAERKCPKEEEEDSEATVVLDRKVSVREKIKRLLQSIERDDGDDEEEEAITRRRSSSSKNEKSSVPRSCHQCLRIDNRVVRCQNCNAKRFCVPCIRRWYPQMSEEAIAESCPYCRGYCNCKTCLCRKVAAMDSKNVGLPLNQDEKIQYLKHLVRSLYPFLEQFNHEQQLELEMEAKIRGLLLSDLEVNQIVCSAYERIYCNNCKTSIIDFHRSCPNCSYDLCITCCREIRGSFLQEELVEQYIDASNAHVHTGEPLNLHSFKKESAEICLGSGSKNSVGPKHVWRAMKNGAIPCPPKDNDGCGYEYLVLKCIHSQNWISELKEKVKSLVKVHGLEDLAAVSAQCTLCFNSHDESGSINKNLRKAASREDSKDNYLYCPSASDAKCGDLEHFQGHWIRGEPVIVRNSLELTSGLSWQPMVMWRAMRELTYHHSKHLNVKAIDCLDWCEVEINIHKFFKGYSEGRTHRDSWPEVLKLKDWPPSNLFERKLPRHGMEFISALPYKEYTHPRSGFLNMVTKLPKKSLKPDLGPKTYIAYGFAEELGRGDSVTKLHCDMSDAEVTLTSEHRTKIERLKQQFAAEDTSEPFQVLQVKKDRKGENVGDVTKANTVISNVHNLTNEALQQDAGCISQPVHSESLHSGQEVAKGGAIWDIFRRQDIPKLEEYLRNHCREFRHLHCSRVEKVFHPIHDQVFYLNCHHKRKLKEEFGIEPWTFIQNLGEAVFIPAGCPHQVRNIKSCIKVALDFVSPENINECIRLTEEFRTLPPIHRAKEDKLGVKKMCLHALSQAADDLENLVE* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0654 894 Pfam JmjC domain, hydroxylase 730 842 IPR003347 -
Lja6g0654 894 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Lja6g0654 894 MobiDBLite consensus disorder prediction 145 159 - -
Lja6g0654 894 Pfam WRC 16 56 IPR014977 -
Lja6g0654 894 ProSiteProfiles JmjC domain profile. 606 859 IPR003347 -
Lja6g0654 894 Coils Coil 80 100 - -
Lja6g0654 894 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 12 892 IPR045109 GO:0032454|GO:0033169
Lja6g0654 894 MobiDBLite consensus disorder prediction 77 92 - -
Lja6g0654 894 Gene3D Cupin 472 868 - -
Lja6g0654 894 MobiDBLite consensus disorder prediction 52 69 - -
Lja6g0654 894 SMART cupin_9 587 859 IPR003347 -
Lja6g0654 894 MobiDBLite consensus disorder prediction 52 106 - -
Lja6g0654 894 SUPERFAMILY Clavaminate synthase-like 485 890 - -
Lja6g0654 894 CDD cupin_RmlC-like 782 843 - -
Lja6g0654 894 MobiDBLite consensus disorder prediction 140 163 - -
Lja6g0654 894 ProSiteProfiles Zinc finger RING-type profile. 168 214 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0654 Lja-Chr6 15042108 15050082 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lja6g0654 JmjC 9.2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0654 K15601 - gmx:100808936 926.391