Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0648 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAAGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCGGGGACTCGTGTGGTTTACTTCCCCCAGGGTCATAGTGAGCAGGTTTCTGCCACTACTAACAGAGAAGTTGATGGGCACATGCCCAATTACCCAAGCTTACCACCTCAATTGATCTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAAATGACACTGCAGCCGTTGACTCCGGAAGAGCAAAAGGATACATTTCTTCCTATGGAATTGGGCCTTCCAAGTAAGCAGCCTTCGAATTATTTTTGCAAGACTTTAACCGCCAGTGACACCAGTACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCTCTGGATTTCTCCCAGCAACCACCTGCACAAGAACTAATTGCTAGGGATCTCCATGATGTTGAATGGAAGTTTAGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTATATTTGTTAGCGCCAAGAGACTCGTAGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTTTTTTGGGAATACGTCGAGCCAACCGTCCACAAACTATAATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAACTAATAGCTGTTTTACCGTGTTCTTTAATCCAAGGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATGTCAAAGCTGTGTACCATACGCGTATTTCTGTTGGTATGCGCTTCAGGATGCTTTTTGAGACAGAAGAGTCAAGTGTCCGAAGGTACATGGGTACAATAACTGGCATAAGCGATCTGGATACTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGAGTGTCGTTATGGGAAATTGAGCCTTTAACAACATTTCCAATGTACCCATCATTATTTCCCCTCCGATTGAAACGTCCATGGCATCCTGGCACCACATCTTTGCAAGATGGCAGAGACGAAGCAACTAGCGGGCTAATGTGGCTGAGAGGTGGACCTGTAGATCAAGGATTTAATTCCCTAAATTTTCAAGGCGCTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCAGGACCCGGGTAGCGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAACCTTTCAATTATCTTCAACAGCCTGGAAATGGTAATTCTCCTTTGCAACTTCAGCAGCAGCAGCAGCATGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCTCAAGTACTCACAGAGAACCTGTCTCAGAACCTCCTTCAGAAACCACATAACAGTCAACAAGTCCAAGCACAGCAGCAGCAGCAGCAGCATACCTATCGCGATACACTTTTAATTCAAAGTGATCAGCTCAATCAGAGACAAGTGCCTTCTCCGTCGTATTCCAAACCAGATTTCTTGGATTCGAGCTCAAAATTCAGCACTTCAGTTCCCCCAGGACAAAATTTGCTTAGTTCACTTTGTTCCGAAGGAAGTGGTGGTCTCTTAAATTTATCCAGAAGCGGTCAGTCCTTGATAACTGACCAGTTACCCCAACAATCATGGACTCCAAAGTATCCACCCATGCAGGTCAATTCCTTCAGCAGTACGATGTCACATTCACCGTATTCTGGGAAGGATTCTGCGATGGGGCCACCACATTGTAATTCAGATACTCAAAATTCTACTCTATTTGGTGTCAATATTGATTCATCCGGTCTTCTACTCCCCACCACTGTCCCTGGTTACACCACTTCATCAGCTGATACTGATGCATCAACAATGCCATTATTAGGGGATTCTGGATTCCAGGGTTCTCTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAAAGTGCAGGGCAAGATGACCCCCAAAACCAGAGTCAAACATTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCGCGGTTCAGCAGCTATCATGAGCTGCGCGAGGAGTTGACTCGGATGTTTGGAATTGAGGGGAAGTTGGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAGTGACGTTCTTCTCCTTGGAGACGATCCCTGGGAATCATTTGTCAACAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAAGATCAAGCGTTGGAATCCATTGCTCCGAGTTCAGGACAAAGGCTCAATGGCAGTGTTGCAGAATCTCACCTCATTGTTTCGGGCCCGCCATCGATTGGCTCCCTTGAATACTGA 2544 0.4615 MKLSTSGLGQQGQEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVSATTNREVDGHMPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKDTFLPMELGLPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLFLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYVKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTTSLQDGRDEATSGLMWLRGGPVDQGFNSLNFQGAAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQDPGSGYLMRPQMMNFQQPFNYLQQPGNGNSPLQLQQQQQHAIQQSVSSNMLQPQAQVLTENLSQNLLQKPHNSQQVQAQQQQQQHTYRDTLLIQSDQLNQRQVPSPSYSKPDFLDSSSKFSTSVPPGQNLLSSLCSEGSGGLLNLSRSGQSLITDQLPQQSWTPKYPPMQVNSFSSTMSHSPYSGKDSAMGPPHCNSDTQNSTLFGVNIDSSGLLLPTTVPGYTTSSADTDASTMPLLGDSGFQGSLYACMQDSSELLQSAGQDDPQNQSQTFVKVYKSGSVGRSLDISRFSSYHELREELTRMFGIEGKLEDPLRSGWQLVFVDRESDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEDQALESIAPSSGQRLNGSVAESHLIVSGPPSIGSLEY* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0648 847 SUPERFAMILY CAD & PB1 domains 718 794 - -
Lja6g0648 847 Gene3D - 126 229 IPR015300 -
Lja6g0648 847 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 832 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja6g0648 847 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Lja6g0648 847 Gene3D - 292 364 - -
Lja6g0648 847 SUPERFAMILY DNA-binding pseudobarrel domain 112 257 IPR015300 -
Lja6g0648 847 Gene3D - 716 809 - -
Lja6g0648 847 SMART B3_2 128 230 IPR003340 GO:0003677
Lja6g0648 847 MobiDBLite consensus disorder prediction 548 571 - -
Lja6g0648 847 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Lja6g0648 847 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja6g0648 847 Pfam AUX/IAA family 712 804 IPR033389 -
Lja6g0648 847 ProSiteProfiles PB1 domain profile. 720 804 IPR000270 GO:0005515
Lja6g0648 847 PANTHER AUXIN RESPONSE FACTOR 1 832 - -
Lja6g0648 847 CDD B3_DNA 127 223 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0648 Lja-Chr6 14973549 14983487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0648 98 810 B3 DNA Binding Superfamily AT5G37020 68.923 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja6g0648 AUX_IAA 4.7e-08 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0648 6 14973549 14983487 Lja6g0648 6 14973549 14983487 PCT