LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja6g0632	ATGCTGCAACTTCAACACAAGCTCCTAGCCTTGACCCTGTTCTTGTTGTGGTCATGGAGGAGCTTTCACGGTGCACTGGGTGACCCTCAAACGCGGTTAATCAACAAGGGTTGCAGCCAATACAACGCCACCACCTTGTCCACCTTCAACCAAAATCTGAACGGGACTCTTGCGGATTTGAAATCGCAGGTGAGTAATCAAAGCAAGCGTTTTGCGACGGCGCAGGAAGCAAGGGGAACGGACCCTGTTTATGCTATGTTTCAATGCCGGGATTATCTCTCTGCAGCTGACTGCGCCGCCTGCTTCACCGTCGCCGCCGCTCAAATCAGGAATTGCTCAGCCGGTGCCAATGGGGCCCGTGTCATCTATGATGGTTGCTTCCTTAGGTACGAGAGCAATGGCTTCTTCGATCAAACCACTCTACCCGGCAACAGTATGATTTGCGGAAATGAGACTGCAAATGGAGCCTCTACTTTCACTGCAACTGCACAGCAAGTGCTACAGGATCTACAAACAGTAACACCAAAAATCACTGGTTTCTTTGCAGCTACCAAGACACCAGTGGCTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGACACTGTCACAGAGAGTGGTTGTTTGGATTGCTTGACAGTAGGATTCAACAACATACAGAGTTGTCTTCCCAATTCAGATGGGAGGGCATTTGATGCAGGGTGTTTTATGAGATACTCTGAGACATCCTTCTTTGCTGATAACCAGACCATTGATATCACACCCTTCTTAAAACAAGGCGGTTCAAGCAAGAAGGGGGCTATTATTGGTGGTATTGTTGGAGGTGTAGGTCTTGTTGTAATCCTTCTTGCACTATTTGTCTGGCTTAGAAGGTACAAGAAACCCAATAGGCATCCTAGAGGTGACATATTGGGAGCAACTGAGCTGAAAGGTCCAGTTACCTACAGGTACAAAGATTTGAAGTCTGCAACAAAAAACTTTAGCAATGACAATAAACTAGGAGAAGGAGGTTTTGGAGATGTATATAAGGGCACTCTAAAAAATGGTAAAGTAGTTGCAGTCAAGAAATTGCTATTAGGCCAATCCAGCAAGATGGATGAACAATTTGAAAGCGAAGTGAAGCTTATAAGTAATGTTCATCATAGGAATCTAGTTCGACTTCTTGGATGTTGCACAAACGGCCCAGAGAGAATCCTTGTATATGAATACATGGCCAACAACAGTCTTGACAGATTCTTATTTGGTGAAAGGAAGGGTTCTCTCAACTGGAAACAAAGGTATGACATAATTTTAGGCACTGCAAGGGGTCTGTCCTATCTACATGAGGATTTCCATGTTTGCATCATACATAGAGATATAAAGACCAACAATATCCTCTTGGATGATGATTTTCAGCCTAGAATTGCTGACTTTGGGTTGGCAAGGCTTCTACCAGAAGACCGATCTCATCTCAGCACAAAATTTGCAGGAACATTGGGATATACAGCTCCTGAGTATGCACTCCATGGTCAGTTATCAGAGAAGGCTGATACCTACAGCTTTGGTGTTGTAGTCCTAGAAATCATAAGTGGCCAAAAGAGCAGCGAATTGAGGGATGATGCTGATGGTGAATTCCTCCTTCAAAGGGCATGGAAACTGTATGAGGTTGAGAGGCACTTGGAGCTAGTTGACAAGACATTGAACTCTGAGGACTATGATGGTGAAGAAGTGAAAAGAATCATAGAGATTGCTTTATTATGCACTCAAGCTTCAGCTTCTGCAAGGCCAACAATGTCTGAAATTGTAGTCCTTCTCAAAAGCAAGAACTTATTGGTGCACATGAAGCCAGCCATGCCTGTCTTTGTCGAATCAAACTTCAGGCCCCGGACAGACACATCTACCTCAACTGGTTCCTCTACATCTAAATCTAATGCTACTGTTTCCACTTCTGTACTATCAGCTCGATGA	1947	0.4458	MLQLQHKLLALTLFLLWSWRSFHGALGDPQTRLINKGCSQYNATTLSTFNQNLNGTLADLKSQVSNQSKRFATAQEARGTDPVYAMFQCRDYLSAADCAACFTVAAAQIRNCSAGANGARVIYDGCFLRYESNGFFDQTTLPGNSMICGNETANGASTFTATAQQVLQDLQTVTPKITGFFAATKTPVAGGAIYAIAQCADTVTESGCLDCLTVGFNNIQSCLPNSDGRAFDAGCFMRYSETSFFADNQTIDITPFLKQGGSSKKGAIIGGIVGGVGLVVILLALFVWLRRYKKPNRHPRGDILGATELKGPVTYRYKDLKSATKNFSNDNKLGEGGFGDVYKGTLKNGKVVAVKKLLLGQSSKMDEQFESEVKLISNVHHRNLVRLLGCCTNGPERILVYEYMANNSLDRFLFGERKGSLNWKQRYDIILGTARGLSYLHEDFHVCIIHRDIKTNNILLDDDFQPRIADFGLARLLPEDRSHLSTKFAGTLGYTAPEYALHGQLSEKADTYSFGVVVLEIISGQKSSELRDDADGEFLLQRAWKLYEVERHLELVDKTLNSEDYDGEEVKRIIEIALLCTQASASARPTMSEIVVLLKSKNLLVHMKPAMPVFVESNFRPRTDTSTSTGSSTSKSNATVSTSVLSAR*	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja6g0632	648	CDD	STKc_IRAK	333	599	-	-
	Lja6g0632	648	MobiDBLite	consensus disorder prediction	620	648	-	-
	Lja6g0632	648	ProSiteProfiles	Gnk2-homologous domain profile.	31	135	IPR002902	-
	Lja6g0632	648	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	24	642	-	-
	Lja6g0632	648	Coils	Coil	50	77	-	-
	Lja6g0632	648	ProSitePatterns	Protein kinases ATP-binding region signature.	333	356	IPR017441	GO:0005524
	Lja6g0632	648	Gene3D	-	30	135	IPR038408	-
	Lja6g0632	648	Gene3D	-	144	244	IPR038408	-
	Lja6g0632	648	Pfam	Protein tyrosine and serine/threonine kinase	330	597	IPR001245	GO:0004672\|GO:0006468
	Lja6g0632	648	Gene3D	Phosphorylase Kinase; domain 1	300	403	-	-
	Lja6g0632	648	SMART	serkin_6	327	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja6g0632	648	ProSiteProfiles	Gnk2-homologous domain profile.	141	244	IPR002902	-
	Lja6g0632	648	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	24	642	-	-
	Lja6g0632	648	ProSiteProfiles	Protein kinase domain profile.	327	614	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja6g0632	648	Pfam	Salt stress response/antifungal	38	132	IPR002902	-
	Lja6g0632	648	Pfam	Salt stress response/antifungal	148	241	IPR002902	-
	Lja6g0632	648	Gene3D	Transferase(Phosphotransferase) domain 1	404	608	-	-
	Lja6g0632	648	SUPERFAMILY	Protein kinase-like (PK-like)	311	628	IPR011009	-
	Lja6g0632	648	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	448	460	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja6g0632	Lja-Chr6	14860132	14866024	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja6g0632	8	648	Receptor kinase-like Gene Family	AT1G70520	37.270	5.09e-130	395

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Lja6g0632		PK_Tyr_Ser-Thr	2.7e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja6g0632	-		-	lja:Lj6g3v0353760.1	1088.56