Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0608 ATGGCGATTCAAGATCAAAATGGATTTACTAGATCACTAGTTAGCCCTCCAGTAGGAAGTGGAGTTGTATCTTTGAGTTCTGGATCGCATTCTGCAACTCATATTCAACTCGATGATCCGTTATCTTGCGGGAATGACTATGCTCTGAAGGCAAGGAAACCATATACCATTACTAAACAGAGAGAGAGGTGGACAGATGAAGAACATAACAAGTTCCTTGAAGCTTTAAAGCTGTATGGCCGGGCCTGGCGACGCATTGAAGAACATATTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGACTCTAGTGGGAAAATTACGAGCACTGAGGATTCAATTGAGATTCCTCCTCCAAGACCAAAACGAAAGCCGATGCATCCTTACCCTCGTAAGCTTGCTACCCCTAGAAAAGAAATTTCGATCCCTAGAAAAGAGATTTCGATCCCAGAAAAGAGAATGAAGTCGAATTCTCTGAAGTCATTGGATTTTGATCAAGAAAACCAATCCCCCAAATCAGTGCTATCTGCAGTTGGTTCCGAAAGCCTTGGGTCCTCTGATTCAGACACACCAAATGGAAGTTTATCCCCGGTATCATCCATTAGTCGTGTCCACACAAGTGGTTTTACACTTGCTGAATCCAGAACACCATGTGAGGAAGCTTCATTGAATGCTGATTCCGTTCATGATGAGAAAACTCTTATGAAATTCGAAAGTTTTTCTGCGAAAGAAGATGCAGCAGAAGAATCATCCAGTCGAACACTCAAACTTTTTGGGACAACTCTATTTGTAACTGATGAGGCATGCAAACCATCTTCTCCAATAATTGAGGCATGCAAACCAATACCTCTCGACGTACGTGCCCATTGCCTTAGCGAGGGGCATACAAAATTGGAACTTGTTGGCAACAGTGCACTAAATGAAACATCAACCATATCCCAACTAAGGGTGAGAGTGAGAACTGCATCATGTGGGAAAGGTTTTGTGCCATATAAAAGGTGCATGCCACAGACCGAAAACCAATCTTCATCTGTAACAGCTGATGACAGAGAAGAGCAATGCATCCAACTTTCATTATAG 1110 0.4261 MAIQDQNGFTRSLVSPPVGSGVVSLSSGSHSATHIQLDDPLSCGNDYALKARKPYTITKQRERWTDEEHNKFLEALKLYGRAWRRIEEHIGTKTAVQIRSHAQKFFSKVLRDSSGKITSTEDSIEIPPPRPKRKPMHPYPRKLATPRKEISIPRKEISIPEKRMKSNSLKSLDFDQENQSPKSVLSAVGSESLGSSDSDTPNGSLSPVSSISRVHTSGFTLAESRTPCEEASLNADSVHDEKTLMKFESFSAKEDAAEESSSRTLKLFGTTLFVTDEACKPSSPIIEACKPIPLDVRAHCLSEGHTKLELVGNSALNETSTISQLRVRVRTASCGKGFVPYKRCMPQTENQSSSVTADDREEQCIQLSL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0608 369 PANTHER SWI/SNF COMPLEX-RELATED 24 283 - -
Lja6g0608 369 PANTHER PROTEIN REVEILLE 7-RELATED 24 283 - -
Lja6g0608 369 MobiDBLite consensus disorder prediction 117 210 - -
Lja6g0608 369 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Lja6g0608 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Lja6g0608 369 SUPERFAMILY Homeodomain-like 55 108 IPR009057 -
Lja6g0608 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Lja6g0608 369 MobiDBLite consensus disorder prediction 142 170 - -
Lja6g0608 369 CDD SANT 63 106 IPR001005 -
Lja6g0608 369 Pfam Myb-like DNA-binding domain 61 104 IPR001005 -
Lja6g0608 369 MobiDBLite consensus disorder prediction 171 210 - -
Lja6g0608 369 SMART sant 60 108 IPR001005 -
Lja6g0608 369 Gene3D - 63 109 - -
Lja6g0608 369 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0608 Lja-Chr6 14577568 14580881 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g0608 Myb_DNA-binding 3.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0608 - - gmx:780539 464.922