Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0607 ATGTCACCGAGTGTGTTGCCACTAACACTAACCATTCTTTTCACCCTCACTTCACTAACCACCTCCCTCTACCTTTCTCCATCACCCCCAGCCGCACCGTTCTCCGAATCCACCCCGCCGGAACAACCACCCTCCGCCGCCGAATGGCTCCCCGCCACCGCCACACACTACACCGCCACAACTTCTGACTCAGTGGACGGCGCGTGCGGCTATGGAAACGGTTACGGCACGGCCACCGCCGCACTCAGCCAGGCTCTCTTCGGTCGCGGCCAGATCTGCGGCGCGTGCTTCGAGCTCCGGTGCGTTGAGGAGGAGTCAGCGACAGCGTTCGACCGGCGGTGGTGCGTCTCCAGCAGCACCTCCGTGGTGGTCACTGCTACCGACTTCTGCGCCCCGAACTACGGCTTCGACGCCGAGAGCCGCGGCGGAAGGTGTAACCCTCCAAAGCAGCACTTCGTGCTCCCTGTGGAAGCGTTTGAGAAGATTGCGATCTGGAAGGATGGTAACATGCCTGTGGAGTTTCGGAGGGTAAAATGCAGAAGGGAAGGGGGGATCCGGTTTACAATTAGCGGTTCCGGCATCTTCATTTCGGTGTTGATCAGTAATGCTGCTGGTATGGGAGACATTGTTGCTGTGAAGACCAAGGGTTCAAGAACTGGTTGGCTTCCCATGGGTCGAAATTGGGGCCAAAACTGGCATCTAAATGCGTTACTGCAAAACCAGCCTCTTTCTTTTGAGGTTACTAGTAGTGATGGAATAACACTCACATGTTACAATGTTGCTCCCAAGAATTGGAGCTTTGGGCAAACCTTTGAAGGCAAGCAATTCGAGTCTTGA 837 0.5591 MSPSVLPLTLTILFTLTSLTTSLYLSPSPPAAPFSESTPPEQPPSAAEWLPATATHYTATTSDSVDGACGYGNGYGTATAALSQALFGRGQICGACFELRCVEEESATAFDRRWCVSSSTSVVVTATDFCAPNYGFDAESRGGRCNPPKQHFVLPVEAFEKIAIWKDGNMPVEFRRVKCRREGGIRFTISGSGIFISVLISNAAGMGDIVAVKTKGSRTGWLPMGRNWGQNWHLNALLQNQPLSFEVTSSDGITLTCYNVAPKNWSFGQTFEGKQFES* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0607 278 SUPERFAMILY PHL pollen allergen 181 273 IPR036749 -
Lja6g0607 278 Gene3D - 184 276 IPR036749 -
Lja6g0607 278 PRINTS Expansin/Lol pI family signature 167 183 IPR007118 GO:0005576
Lja6g0607 278 PRINTS Expansin/Lol pI family signature 48 63 IPR007118 GO:0005576
Lja6g0607 278 PRINTS Expansin/Lol pI family signature 221 235 IPR007118 GO:0005576
Lja6g0607 278 PRINTS Expansin/Lol pI family signature 259 273 IPR007118 GO:0005576
Lja6g0607 278 PRINTS Expansin signature 183 195 IPR002963 GO:0009664
Lja6g0607 278 PRINTS Expansin signature 74 88 IPR002963 GO:0009664
Lja6g0607 278 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Lja6g0607 278 PRINTS Expansin signature 259 275 IPR002963 GO:0009664
Lja6g0607 278 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Lja6g0607 278 SUPERFAMILY Barwin-like endoglucanases 45 202 IPR036908 -
Lja6g0607 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 273 IPR007117 -
Lja6g0607 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 184 IPR007112 -
Lja6g0607 278 PANTHER EXPANSIN-A13 29 277 - -
Lja6g0607 278 Pfam Lytic transglycolase 79 174 IPR009009 -
Lja6g0607 278 Gene3D - 35 180 IPR036908 -
Lja6g0607 278 PANTHER EXPANSIN-A15 29 277 IPR002963 GO:0009664
Lja6g0607 278 Pfam Expansin C-terminal domain 185 262 IPR007117 -
Lja6g0607 278 SMART dpbb_1 79 174 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0607 Lja-Chr6 14563809 14565800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0607 48 278 Expansin Gene Family AT3G03220 69.068 1.50e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0607 - - gmx:100790211 388.652