Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0606 ATGACAATGGGAGAAGAAGAGTCATTGGCAGCACTCCCATTTGACAGAACTGTTGAACAGGCTATTGTGTCGATAAAGAAAGGTGCATATTTACTCAAGTGTGGTGATAGAGGAAAGCCAAAGCTATGTCCCTTCAGACTTTCTCCGGATGAGAGAAACTTGATTTGGTACTCTGGCCAGCAGGAAAAACATTTGCGGTTGAGTGCGGTTACGAAAATCGTTCAAGGCCAAGGAAATATAAGGTCCCAGAGGCAAATTGAACAACCTGAAAAGGAGTACCATTCGTTTTCACTCATCTATGCAAACGGGGAACGCTCCCTTGAGCTGATATGCAAGGACAAAGCTCAAGCTGCTTCTTGGTTTGTTGGATTGAAGGCTGTGATTTCTAGGAGCCAACAACCCAGAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGGGTGCAGAGTTGTGTTAGTAGTCCAGCTGGATTCCTAAGAAGAAAGAAAAATCTTGGCCTTCTGGATGAAACCTCTCAATATACTCAGGTACACAGCTCATGTGCAAGTCCTACATTGTCACTTTCCGAAAGGTACTTTTCTGATGCCTTGTCATGCACATCAGACAACTTATATTCATCAGCATCTTTCCTCTCCAGCTCTCATGGAATAGCAGATAATTCGGTCCCAAGTTCTCCTTATATTGATCCACATACTCATAGCAAGCGTGATTCAATGCGCGTTGACAAGGAATCCAAGACGGATTTGTCCTACCGGTCTGCGATGCCTCCTTCCTCCCCACATGTAACAAATAACAATGTATTGAAGGATATAATGATATGGGGTGGAGGGATTGAATGTCTTGTAGGGATTGTGAATGAAAGGTTTGCACAACAAAAAAATTATTCTTTAGTTCCAAAGCTACTTGAATCCACTGCAATGTTAGATGTAAAAAATATAGCTTTAGGAGGAAAACATGCTGCTTTAGTTACAAAACAAGGGGAAGTGTTTTGCTGGGGTCAAGGGAAATGGGGAAAACTGGGGCAGAAAATTGATATGGACATTAGCTCCCCCAAAATTGTTGATTCTCTTAGCGGTATTCATGTAAAAGACATTGTCTGTGGTGAGTATCATACATGTGCTTTGACAGATTTTGGTGAAGTCTACACTTGGGGGAACGATGTTTGCAGTTTAGATTCGGTCGATAAAGGGAGAATTAAAAGTCATTGGATACCACATAAACTTACTGGACCATTAGATGGTATTAGTATTTCAAGTGTTTCTTGTGGGGAATGGCACACTGCAATTGTCTCTAGCTGTGGGAGGTTATTCACATATGGAGATGGTACATTTGGAGTTCTCGGGCACGGGGATCGCCAAAGCTTTTCGAAACCTAAAGAAGTTCAATCTCTCAGTGGTTTAAGGGCGAGGTCTGTTGCCTGTGGATCATGGCACACAGCTGCTATTGTTGAAGTCATGTTTGACCGGTTTCGGTACAATAGTCCCACAGGTAAGCTTTTCACATGGGGTGATGGAGATGAAGGGAGGCTTGGTCATGCTGATAATGGATCCAAGCTTGTACCGACTTGTGTTGCACAGCTTGTTGACTATGACTTTGTTCAAGTATCTTGTGGAAGAATGTTGACTGTAGCACTAACTAACATGGGTAAGGTTTTTGCAATGGGAAGCGCAAAGTATGGACAATTAGGAAACCCACATGCTAGGGATAGGGCAGTTATGGTTGAAGGAATGCTTAAGCAAGAGTTTGTGAAAGTGATATCGTCTGGTTCGTACCATGTTGCTGTTTTGACATCTGCAGGGAGTGTCTATACATGGGGAAAGGGTGAAAATGGGCAACTAGGGTTAGGTGATACTGAAGACAGACACACGCCTTGTTTTGTCGAGGCTCTAAGAGAGAGGCAGGTAGATACTATAACTTGTGGACCGAGCTTCACAGCTGCAATATGTTTGCACAGACCCATTTCTATTAGTGACCAATCAACTTGTAGTGGTTGTAGGTTGCCATTTGGATTCACAAGGAAGAAGCATCACTGTTATAACTGTGGTCTCTTATTCTGTCGCAATTGTAGTAGTCGAAAGGCTTTAAATGCGTCTCTAGCCCCGAGTAAGAGCAAGGCCTTTCGGGTCTGTGATCAGTGCTTTGAAAGACAGCAAGGAAATAATACACATTCAATTCTGGGCTCAAGGTCAAGAAATTGCAACAACCCTCAGCAGAACAATTTTGGTGATCTCACTGAAGATAGGGGAGGAACAACCATGACGCAGGGTCCTCTATTGTCTCCTGGTCAATCTTGTTACCGAAAAAGCATGCCGAGTGGAAGGAAGGACTGGAAAAACCAACAAGAAAACCAGCAGGATTTAGAAGAGAAATCTTCTGTGTTAAGTGGAGTGGCACCATGGGGGCAAGTTCAATACCCTGCACTATTTAAAAACAATTTAGCAGAATATTCAGCTATGCTTGTTTCTTCATCAAAAAATAAATTAGCTGCAGTTTCACCACTGAATGTAGAACCATCAGAACACAAGCTACCCTATGCAGAGACAGATACAAAAAAGTCTGATAAGATGCTCATAGAAGAAGTTCAGAGGCTGAGAGATGAGGCAAGGAGACTTCAAGAGCAGTGTGATCTCAGAGACAACAAAATACAAGAGTGTCAACAAAAAATTGATGAGAGTTGGCTTATAGCGAAGGAGGAAGCTGCTAAGTGCAAGGCAGCAAAAGAAGTCATTAAAGCTTTGGCACTAAGGTTGCAGCTCCATACAATATCAGGAAAAGATAATGTTGGGCAAGAAGGAAAGGCTGGACTACATGAATCTCTTCCTAATTTGGCACCGGTACATACAGATATGAACAGTCCAAGAGATAGCAACATGGACAGTCTCTCCAATTCCCCTATAGTATTCTCTGCCACATTAAAATCCAAATTTGGAAAAAGTAAGTTCCTAAAAAATGATAGATCGAAGGAGAATTCTAACTTAACTCAAGCAGAACCTCAACAGGATACTGCAGATGGCTTGAAGGTTGAATGGGTAGAACAGTATGAACCTGGTGTTTATATCACACTTACAACCTTGCCATGTGGGAATACAGGCCTTAAACGCGTGAGATTTAGCCGGAAGCGATTCTTTCAGATGGAAGCTGAACGTTGGTGGGAAGAGAATCAATCTGCAGTGTACCATAAGTATGAGATTGAAGGATATAAAAGCACTAGCCAAAATCAGGTGAAAGGCTAA 3228 0.4238 MTMGEEESLAALPFDRTVEQAIVSIKKGAYLLKCGDRGKPKLCPFRLSPDERNLIWYSGQQEKHLRLSAVTKIVQGQGNIRSQRQIEQPEKEYHSFSLIYANGERSLELICKDKAQAASWFVGLKAVISRSQQPRAFSSLRSCKGVQSCVSSPAGFLRRKKNLGLLDETSQYTQVHSSCASPTLSLSERYFSDALSCTSDNLYSSASFLSSSHGIADNSVPSSPYIDPHTHSKRDSMRVDKESKTDLSYRSAMPPSSPHVTNNNVLKDIMIWGGGIECLVGIVNERFAQQKNYSLVPKLLESTAMLDVKNIALGGKHAALVTKQGEVFCWGQGKWGKLGQKIDMDISSPKIVDSLSGIHVKDIVCGEYHTCALTDFGEVYTWGNDVCSLDSVDKGRIKSHWIPHKLTGPLDGISISSVSCGEWHTAIVSSCGRLFTYGDGTFGVLGHGDRQSFSKPKEVQSLSGLRARSVACGSWHTAAIVEVMFDRFRYNSPTGKLFTWGDGDEGRLGHADNGSKLVPTCVAQLVDYDFVQVSCGRMLTVALTNMGKVFAMGSAKYGQLGNPHARDRAVMVEGMLKQEFVKVISSGSYHVAVLTSAGSVYTWGKGENGQLGLGDTEDRHTPCFVEALRERQVDTITCGPSFTAAICLHRPISISDQSTCSGCRLPFGFTRKKHHCYNCGLLFCRNCSSRKALNASLAPSKSKAFRVCDQCFERQQGNNTHSILGSRSRNCNNPQQNNFGDLTEDRGGTTMTQGPLLSPGQSCYRKSMPSGRKDWKNQQENQQDLEEKSSVLSGVAPWGQVQYPALFKNNLAEYSAMLVSSSKNKLAAVSPLNVEPSEHKLPYAETDTKKSDKMLIEEVQRLRDEARRLQEQCDLRDNKIQECQQKIDESWLIAKEEAAKCKAAKEVIKALALRLQLHTISGKDNVGQEGKAGLHESLPNLAPVHTDMNSPRDSNMDSLSNSPIVFSATLKSKFGKSKFLKNDRSKENSNLTQAEPQQDTADGLKVEWVEQYEPGVYITLTTLPCGNTGLKRVRFSRKRFFQMEAERWWEENQSAVYHKYEIEGYKSTSQNQVKG* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0606 1075 Coils Coil 852 886 - -
Lja6g0606 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 325 376 IPR000408 -
Lja6g0606 1075 MobiDBLite consensus disorder prediction 723 788 - -
Lja6g0606 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 598 646 IPR000408 -
Lja6g0606 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 495 543 IPR000408 -
Lja6g0606 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 325 373 IPR000408 -
Lja6g0606 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 432 480 IPR000408 -
Lja6g0606 1075 Pfam Regulator of chromosome condensation (RCC1) repeat 377 427 IPR000408 -
Lja6g0606 1075 Pfam Transcription factor regulating root and shoot growth via Pin3 1006 1060 IPR013591 -
Lja6g0606 1075 Gene3D - 232 392 IPR009091 -
Lja6g0606 1075 Gene3D - 393 484 IPR009091 -
Lja6g0606 1075 MobiDBLite consensus disorder prediction 769 783 - -
Lja6g0606 1075 CDD PH_PLC_plant-like 16 129 - -
Lja6g0606 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 547 597 IPR000408 -
Lja6g0606 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 267 324 IPR000408 -
Lja6g0606 1075 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 723 IPR013083 -
Lja6g0606 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 377 431 IPR000408 -
Lja6g0606 1075 Pfam Pleckstrin homology domain 19 126 IPR001849 -
Lja6g0606 1075 MobiDBLite consensus disorder prediction 982 1002 - -
Lja6g0606 1075 MobiDBLite consensus disorder prediction 220 256 - -
Lja6g0606 1075 SUPERFAMILY PH domain-like 17 128 - -
Lja6g0606 1075 Pfam FYVE zinc finger 656 714 IPR000306 GO:0046872
Lja6g0606 1075 Gene3D - 491 656 IPR009091 -
Lja6g0606 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 598 649 IPR000408 -
Lja6g0606 1075 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 17 1063 - -
Lja6g0606 1075 PRINTS Chromosome condensation regulator RCC1 signature 308 321 IPR000408 -
Lja6g0606 1075 PRINTS Chromosome condensation regulator RCC1 signature 536 554 IPR000408 -
Lja6g0606 1075 PRINTS Chromosome condensation regulator RCC1 signature 593 614 IPR000408 -
Lja6g0606 1075 PRINTS Chromosome condensation regulator RCC1 signature 377 393 IPR000408 -
Lja6g0606 1075 PRINTS Chromosome condensation regulator RCC1 signature 434 448 IPR000408 -
Lja6g0606 1075 PRINTS Chromosome condensation regulator RCC1 signature 418 434 IPR000408 -
Lja6g0606 1075 PRINTS Chromosome condensation regulator RCC1 signature 327 343 IPR000408 -
Lja6g0606 1075 SMART fyve_4 648 717 IPR000306 GO:0046872
Lja6g0606 1075 MobiDBLite consensus disorder prediction 939 959 - -
Lja6g0606 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 483 IPR000408 -
Lja6g0606 1075 Gene3D - 17 135 IPR011993 -
Lja6g0606 1075 MobiDBLite consensus disorder prediction 943 959 - -
Lja6g0606 1075 ProSiteProfiles BRX domain profile. 1006 1061 IPR013591 -
Lja6g0606 1075 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 546 IPR000408 -
Lja6g0606 1075 MobiDBLite consensus disorder prediction 723 765 - -
Lja6g0606 1075 MobiDBLite consensus disorder prediction 228 247 - -
Lja6g0606 1075 SUPERFAMILY RCC1/BLIP-II 267 650 IPR009091 -
Lja6g0606 1075 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 654 716 IPR017455 -
Lja6g0606 1075 PANTHER F12P19.9 PROTEIN 17 1063 - -
Lja6g0606 1075 SUPERFAMILY FYVE/PHD zinc finger 653 719 IPR011011 -
Lja6g0606 1075 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 470 480 IPR000408 -
Lja6g0606 1075 CDD FYVE_like_SF 659 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0606 Lja-Chr6 14514963 14522633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0606 1002 1065 Major Intrinsic Protein MIP AT1G31880 46.875 1.16e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0606 - - lja:Lj6g3v0391170.1 1715.28