Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0605 ATGGCACCTGTTTCATTGCCTCCTGGGTTCAGGTTCCACCCCACAGACGAAGAACTTGTTTCTTATTACCTCAAGAGAAAAATCAATGGTCGTAAGATTGAGTTGGAGATCATCCCTGAAGTTGATTTATACAAGTGTGAACCATGGGATTTGCCAGGGAAGTCATTGTTACCGGGAAAAGATTTGGAGTGGTATTTCTTCAGCCCTCGAGACAGGAAGTACCCAAATGGATCAAGAACCAACCGTGCAACAAAATCTGGATATTGGAAGGCCACAGGGAAGGATCGTAAGGTGCACTCTCAGAGTCGAGCAATTGGAATGAAAAAAACCCTAGTTTACTATCGAGGAAGGGCGCCACATGGATCTCGCACTGGTTGGGTCATGCATGAGTACCGTCTTGATGAGAGGGAATGTGAAACTGCTACTGCTTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTTCAAGAAGAGTACAGTGATTGCCCCAAAAGTTGGGGAGCAGTATGTTAATGTCACCAGACATGCAAATCAGATGACAAGTGAGCAATCATCAAGCATTGAACTCTATTCTGAAGGAAGAGGAGAAGTTTTAGAGAGCACAAATTATTTGATGCCGTGGGATACATGCTCAACCCAAAACGTAAATGGGGCTCCAGCATCTTACTCATCATTTCCCAATAGTGGCACAAGGGATAATGGGATGTGGTCACAGTTCTCATCCGATGACTTGCTCAATCTTCCAACATCTTCTTCATCATTTCCCAATTATGGAGCCATACCTTACCCACCATCCAAGGTGGATATAGCACTAGAATGTGCAAGGATGCAGCACAGGTTTACCATGCCTCCCTTGGAGGTAGAGGACTTCCCACAAGTTGGCAATTCTGAGCTGAAGATGATGACACAGGCCTCGGGTTCCATGTCCGGAAGCAAACGTGAAACAGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGTTTCCCAGGAATTGATAAACCAATCCAGCTACTCACAGGCATTATGGGGAAGCAATAGTGACAATTATGCTCCTCATGAGAATGATTTTACTTTTATGGTTGACACTAATAATTACAATCATATGAATGACATGAACTCCTTGAGATATGTTGACAAAGCATGGGAAGATCCAAATGCAAGATCAATAGACATCATAGGAGATCTTCATGATGACTTCAAGGCTGATCAGAGGATGGTGGAGAATTTAAGATGGGTTGGAATGTCAAGCAAAGATTTTGAAAAGAGCTTTATGGAAGAGCAAAAGGTAGTTCCAATTGAGGATATTTCGAGCTTCCAAACTATCAGGGAAGAGAATGAGGTGCAAGCAGAATCTGAGCAACAAAATAGCAACAAAGAACTCAATGATACTGACATTGACAATTTCTCATTGGAGTTCATCAATGATGATGACCCCAATGTGAACTTTATTGATGATGGCAACATTGACTATTCAAATTCTTCAAGCTTTGAGGTAGTAGAGGAAACAAAAGTGAGTCATGGAATGTTTGTTTCCACTGGCCAAATAGCCGAGACATTCTTTCATCAAATAGCTCCTTCACAAACTATCAAAGTTCAACTTAATCCAGTAATGACAAACAAACATTCTATAGAGAATGCAGAGACAATGGTTATAAATCAAGAGTACTCTTTGTTTTGGAAGTTTAAGGACTATGCGTTGGGGAAGCTGATAAAGCCATCAAAGACAACAGCAAGTGCACTTTTATACATCTTTGCAATTTTGTTGATGCATGGTGGTTATTTGAAGGAACAAGTGGAAGATTGGAAACCAGACCTTGTGGATGTAAAAATGAGATCCCAATCAGCTGAGAAAATAACATGGTATGAGGAAGAAAAAATTGGGATTGTTGGTATCAAGTGTGGGAAAGGATTTAGTGTGGTCTTGAAGAAGATAGGCATCTTCCTCACCATATCTTTTGCTCTTTGTACCGTGTGGGCTAACCACATTACAGTTAGCCCTTGA 2004 0.4152 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVHSQSRAIGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECETATASGLQDAYALCRVFKKSTVIAPKVGEQYVNVTRHANQMTSEQSSSIELYSEGRGEVLESTNYLMPWDTCSTQNVNGAPASYSSFPNSGTRDNGMWSQFSSDDLLNLPTSSSSFPNYGAIPYPPSKVDIALECARMQHRFTMPPLEVEDFPQVGNSELKMMTQASGSMSGSKRETDILQEILSVAHVSQELINQSSYSQALWGSNSDNYAPHENDFTFMVDTNNYNHMNDMNSLRYVDKAWEDPNARSIDIIGDLHDDFKADQRMVENLRWVGMSSKDFEKSFMEEQKVVPIEDISSFQTIREENEVQAESEQQNSNKELNDTDIDNFSLEFINDDDPNVNFIDDGNIDYSNSSSFEVVEETKVSHGMFVSTGQIAETFFHQIAPSQTIKVQLNPVMTNKHSIENAETMVINQEYSLFWKFKDYALGKLIKPSKTTASALLYIFAILLMHGGYLKEQVEDWKPDLVDVKMRSQSAEKITWYEEEKIGIVGIKCGKGFSVVLKKIGIFLTISFALCTVWANHITVSP* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0605 667 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Lja6g0605 667 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 405 - -
Lja6g0605 667 ProSiteProfiles NAC domain profile. 6 158 IPR003441 GO:0003677|GO:0006355
Lja6g0605 667 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 405 - -
Lja6g0605 667 Gene3D NAC domain 15 162 IPR036093 GO:0003677|GO:0006355
Lja6g0605 667 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0605 Lja-Chr6 14503014 14507781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0605 1 555 NAC Transcription Factor Family AT1G65910 49.912 1.02e-162 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja6g0605 NAM 5.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0605 - - lja:Lj6g3v0392190.1 1027.7