Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0602 ATGGTTCTGTCCAATACCGCCTCTTCTGGCTCCGAGAGTGACCTTTCCATTCACTCAACCTTTGCTTCCCGCTATGTCAGGACCTCACTTCCCAGGTTCAAGATGCCTCAAGAGTCAATACCGAAGGAGGCAGCATACCAGATCATAAATGATGAGTTGATGCTGGATGGAAACCCAAGATTGAATCTAGCATCATTTGTGACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATCATGGCTTCCATTAACAAGAACTATGTTGACATGGATGAGTACCCTGTTACCACCGAGCTTCAGAATCGGTGTGTGAACATGATAGCACATCTTTTTAATGCACCACTTGGAGACTCTGATACTGCAGTTGGTGTTGGCACTGTTGGCTCATCAGAGGCCATAATGTTGGCTGGATTGGCATTCAAAAGAACGTGGCAGAACAGAAGGAAAGCAGAGGGAAAACCCCATGACAAGCCCAACATTGTCACCGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTTGCAAGATACTTTGAGGTGGAGTTGAAAGAGGTGAAGCTGAGTGAGGGATACTATGTAATGGACCCTCAAAAGGCTGTGGATTTGGTAGATGAGAACACCATTTGTGTTGCTGCTATTCTTGGTTCCACATTAAATGGAGAGTTTGAAGATGTCAAGCGCTTAAATGATCTTCTAATTGAAAAGAACAAGGAAACTGGATGGGACACTCCTATTCATGTTGATGCAGCTAGTGGCGGCTTCATTGCCCCGTTTATTTATCCAGAGCTTGAGTGGGACTTTCGCTTACCACTAGTGAAGAGCATCAACGTTAGTGGCCACAAGTATGGTCTAGTCTATGCTGGAATTGGTTGGGTTATCTGGAGAAACAAGGAGGACTTGCCTGAGGAACTCATCTTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAATCATAGCTCAATACTACCAACTAATTCGCCTTGGTTATGAGGGCTATAAACATGTGATGGAAAACTGCAGAGACAACATGTTAGTACTAAAAGAGGGGCTTCAAAAAACTGGTCGCTTTGAAATTGTGTCCAAAGACAATGGTGTGCCTCTGGTGGCCTTCACACTGAAGGACCACACACACTATAATGAATTCCAAATCTCAGACTCGCTGAGGCGCTTCGGGTGGATAGTGCCGGCATACAGCATGCCCCCAAATACTCAGCACGTGACCGTGGTCCGTGTAGTCATTAGGGAGGACTTCTCAAGGACCCTAGCAGAGCGTCTTGTGGCTGATATTGAGAAAGTGCTGCACGAGCTTGATTCACTCCCTGCAAGGGTGATAAGTAGCACCACTGTGACTGTTACCGGAGAAGAAGATGTGAACAAGAATGGGAAGGTTAAGAAGAGTGCTATTGAGACACAGAGGGAAATCACTACACTTTGGAAGAATTTTGTGTTGGAAAGGAAGAAGCTGAATGACAAGATGAGTGTTGTTTGTTAA 1524 0.4573 MVLSNTASSGSESDLSIHSTFASRYVRTSLPRFKMPQESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRTWQNRRKAEGKPHDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPQKAVDLVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYKHVMENCRDNMLVLKEGLQKTGRFEIVSKDNGVPLVAFTLKDHTHYNEFQISDSLRRFGWIVPAYSMPPNTQHVTVVRVVIREDFSRTLAERLVADIEKVLHELDSLPARVISSTTVTVTGEEDVNKNGKVKKSAIETQREITTLWKNFVLERKKLNDKMSVVC* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0602 507 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 19 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lja6g0602 507 PANTHER GLUTAMATE DECARBOXYLASE 1 507 - -
Lja6g0602 507 SUPERFAMILY PLP-dependent transferases 19 447 IPR015424 -
Lja6g0602 507 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lja6g0602 507 Gene3D - 1 68 - -
Lja6g0602 507 Gene3D - 364 451 - -
Lja6g0602 507 PANTHER GLUTAMATE DECARBOXYLASE 1 507 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lja6g0602 507 CDD DOPA_deC_like 62 442 - -
Lja6g0602 507 Gene3D - 69 363 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0602 Lja-Chr6 14412232 14418160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0602 1 498 Calmodulin-binding Proteins AT5G17330 83.897 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0602 K01580 - gmx:100796533 916.376