Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0601 ATGCCATCATCACTTCCCATGATCTCCATCATCGTCTTCTTCTTCTTCGCCGGCGCCGCCACACAATTCGACTTCGCGACCATAACATTGAGCACACTCAAGCTTCTCGGCGATGCTCACCTCACCAGTAACAACACCATCAGCCTCACTGGCGACCCTGCTGTCCCCAATTCCGCCGCCGGCAGGGCACTCTACTCCACCCCGGTCAGATTCCGGCAGCCGGGGAGCCTCCTCCCGGCGAGCTTCACCACCTTCTTCTCCTTCTCCGTCACCAACCTCAACCCCTCATCCGTCGGCGGCGGCCTCGCCTTCCTCATCTCGCCAGACGCCGCCGCCGTTGGCGACCCCGGCGGGTTCCTCGGCCTCGGCGGCTCATCTTCCTCCTTCCTCGCCGTGGAATTCGACACCCTCATGGATGTTGACCTTCATGACATTAACGGGAACCATGTCGGGTTGGACCTCAACACCGTCGTTTCCACCCAGGTTGGTGATTTGGGGACCATCGGAATCGATCTCAAGAGCGGTGACTCGGTGAACGCGTGGATTGAGTACGATGCGAGGAGCAAAGGGTTTCGCGTTTGGGTCTCGTACTCCAATGTGAAGCCCAGGGATCCGATTCTGAAGGTGGATCTTGATGTGGGTCAGTACGTGAATGAGTTCATGTTCGTGGGGTTTTCTGGGTCAACACAGGGAAGCACAGAGGTTCACAATGTGGAGTGGTGGAGTTTCACCTCCACCTTTGATTCTACGGCGGCGCCGTCGTTGCCTCCGTCTGCTCCACAAAAGGAGAGGAAATCCTCTTCTTGCCACAGTGGGTTGTGTAAGCAGGGAATGGGAGCGGTTGCTGGTGTTGTCACTGCTAGTGCTTTTGCTCTTGCTCTGTTTGCAGGTGCATTGATTTGGGTGTATTCCAAGAAGGTGAAGAGGCGTGAGTCACTTGAGTCAGAAATCATCAAAACCCCTAAAGAGTTTGCTTATAAGGATCTCAAATTGGCCACTAGGGGCTTCAGTGCTAATAGGATTATTGGTCATGGTGCCTTTGGGACTGTGTATAAAGGAGTATTGCCAGAGAGTGGTGACATTGTTGCTGTGAAGCGGTGTAACCATGGTGGTCAGGGGAAGAATGAGTTTTTGTCTGAATTGTCCATAATTGGAAGTCTCCGGCATCGGAATCTTGTTCGGCTTCAAGGTTGGTGCCATGAAAGAGGTGAAATTTTGTTAGTCTATGACTTGATGCCAAATGGGAGTCTAGATAAGGCTTTGTATGAGGCCAGAACACCTTTACCATGGCCTCACAGGCTCAAGATTCTGTTAGGTGTGTCAACTGTTTTGGCCTACTTGCATCATGAGTGTGAAAATCAGGTGATTCACAGGGACATTAAGACTAGCAATATAATGCTAGATGAAGGATTCAATGCTAGGTTAGGTGATTTCGGATTAGCGAGGCAAACGGAGCATGACAAGTCCCCTGATGCAACCGTGGCTGCTGGCACAATGGGGTACCTGGCTCCTGAGTATGTCCTCACAGGTAGAGCCACTGAGAAAACTGATGTGTTCAGTTTTGGTGCTGTGGTTCTTGAAGTGGCCAGTGGGAGAAGACCTATAGAGAAAAACGCCACTGAGAAAACCAATTTAGTTGAATGGGTTAGGAGTTTGCACCAGGAAGGGAAGTTACTAATGGCTTCTGATCCAAGGCTTCAGTGTAATTTTGATGAAGGGGGGATGAGGAGGGTGCTCTTGGTTGGGTTAGCTTGCTCACACCCTGATTCAATTGTAAGACCATCTATGAGGAGTGTGGTTCAGATGCTGCTTGGTGAGGCTGAAGTTACTATTGTCCCTAGAACAAAGCCATCTACTAGTTATAGTACTTCTGAGCTCTTGATGAACTTGCAAGATAGTGAATCTGACAGCAATGCCATAATCACCATCTCTACCTCCCCATCAGAGGACAGCTTCAATCATAGAGATATATAG 1974 0.5051 MPSSLPMISIIVFFFFAGAATQFDFATITLSTLKLLGDAHLTSNNTISLTGDPAVPNSAAGRALYSTPVRFRQPGSLLPASFTTFFSFSVTNLNPSSVGGGLAFLISPDAAAVGDPGGFLGLGGSSSSFLAVEFDTLMDVDLHDINGNHVGLDLNTVVSTQVGDLGTIGIDLKSGDSVNAWIEYDARSKGFRVWVSYSNVKPRDPILKVDLDVGQYVNEFMFVGFSGSTQGSTEVHNVEWWSFTSTFDSTAAPSLPPSAPQKERKSSSCHSGLCKQGMGAVAGVVTASAFALALFAGALIWVYSKKVKRRESLESEIIKTPKEFAYKDLKLATRGFSANRIIGHGAFGTVYKGVLPESGDIVAVKRCNHGGQGKNEFLSELSIIGSLRHRNLVRLQGWCHERGEILLVYDLMPNGSLDKALYEARTPLPWPHRLKILLGVSTVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSFGAVVLEVASGRRPIEKNATEKTNLVEWVRSLHQEGKLLMASDPRLQCNFDEGGMRRVLLVGLACSHPDSIVRPSMRSVVQMLLGEAEVTIVPRTKPSTSYSTSELLMNLQDSESDSNAIITISTSPSEDSFNHRDI* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0601 657 Gene3D Transferase(Phosphotransferase) domain 1 412 614 - -
Lja6g0601 657 CDD lectin_legume_LecRK_Arcelin_ConA 23 247 IPR001220 GO:0030246
Lja6g0601 657 CDD STKc_IRAK 342 603 - -
Lja6g0601 657 Gene3D Phosphorylase Kinase; domain 1 299 411 - -
Lja6g0601 657 Pfam Legume lectin domain 21 250 IPR001220 GO:0030246
Lja6g0601 657 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 19 649 - -
Lja6g0601 657 SMART serkin_6 336 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0601 657 ProSitePatterns Protein kinases ATP-binding region signature. 342 365 IPR017441 GO:0005524
Lja6g0601 657 ProSitePatterns Legume lectins beta-chain signature. 130 136 IPR019825 -
Lja6g0601 657 ProSiteProfiles Protein kinase domain profile. 336 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0601 657 PANTHER - 19 649 - -
Lja6g0601 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 20 248 IPR013320 -
Lja6g0601 657 Pfam Protein kinase domain 338 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0601 657 SUPERFAMILY Protein kinase-like (PK-like) 318 641 IPR011009 -
Lja6g0601 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Lja6g0601 657 Gene3D - 19 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0601 Lja-Chr6 14404217 14406190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0601 7 640 Receptor kinase-like Gene Family AT3G53380 64.809 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lja6g0601 Pkinase 2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0601 - - gmx:100815895 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0601 6 14404217 14406190 Lja6g0601 6 14404217 14406190 PCT