Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0600 ATGGCGCCAAGAAAAATTCACTTGCATCAAGGGAAGAATCCACTCGATGCTTATCCATTTGAAGCTTTTTCATTCGGCTCATGGAAACCCGCAAAGTTCATAAAAATTGAATCAGGAAATGTGACCTTACATTTTATGGATGATGATGAGATGGCTATAAAGAATGGCTACTCAGACATGCGAATAAAGTCAAGGAAGGCTTCTTTGTCTGATTGCACCTCTTTCTTACGGCAAGGGATTGATGTATGTGTGCTATCAACCTTTCAAAGTGATAATTCAGATCAATTGAAATCCAATCCTGTCTGGGCTGATGCTAAGATAACTTCCGTAGACCGAAAGCCCCACAAGCCTGACTGCTCGTGTGACTATTATGTGAATTTTTATGACAATCAAGGAGATTTGGATTTCCCACTCCAAACTCTATGCAAGGAGGTCAAAGTAATTGGGTTGGATCAAATTTCCATCTTACAAAAGCTTGGACGCAAAGGCCATGATAATCAGCCATACCAGTGGGATTCATCAGAAGACTGCATTGCCAGATCACTAACGAAGTTGTTCTTAAGAAACTTCGCATGCGACATTTCATGGCTAGTTGTCGCATCTCTCAAGAAGAATGTCTCCTTCTGCGTGAGATCTGTGGACAACAAGATTCTCTACCAAATCTTGGAAACTGATAGTTGCAGCTCTAATGATTATAACATAAGAGCTGTGAACTTCAGACTCGAAGATGGCATATTTTTTCCCTCTATTTTCGATGTTGATTTCTTTGACACCAAGAGAATTGTCCCTTCAGAACATGATTCCCAAAAAGTGCCACCATCTGTTGAGGGGTTACGGCGTTCCACACGCCGAATTAAGGCACCTGAACGCTACTTGGGTTATGATCTTTGTTCAGGTTCTTTTCGAACTCAGAAATGCAAGATACACAGTGGGAAAGATGATGCAAAGTGGTGCTCTTCAGGACGTTATTATAATCCTACAAGTCGTAAGAAGCATCAGAGGAAGGATTCATCTGATTTGGATGATATGATGGATCTTCAACCTGGATGGAAGGGGCAGAGTTCCAGAAGGGGAACTGAGCGGAAGAGATATCGTTCAGATTATTCAAGAAACATGAATGATGAGGATGAAGAACAACCACGAAGAGGTAGGGCCTTAGATGCAACTGCCTCCAAGAAAATGATAGATTCTTACATGAAGAGCATGAACAAAATACCAACAAAAGAAGAGGCTATTAATGAACAATGGAAGGAAGAGGAGGAGGTAAAAATATCTGAAATGGAAATGTTATGGAGAGAAATGGATGAGGCAATGACAGAGATTTATCTTGAAAAACAAACAGAGGAAGGATTCTTCCCTCTCTCTTTGTTCTCTGGTTCAAATGTTGCTGCTTCAACTCAGACTAAGGAAGAGTCTACCGTAACATGTAAACACAATTATATAGTGGATGAACAAATTGGAGAACGTTGCACGAGATGCGGCTTTGTGAAGACGGAGATAAAATACATTTTTCCACCCTTTATGGAACGCCGGTCATGGAGACACGAGGAGAGGCAATGCATTGGTGAAGAACCAGAGCTGATGGCTGATGATGGTGATGTTGATCTCCATTTGTTCCCTACTCCTGCTGCTTGTGATGAGCCTATATCTAATGAAACTAACAACGTTTGGGCATTGATTCCTGAACTTAGAGAAAAGATGCACCTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGGAGGGTCCATGGACCAAGGACTTATGGAAGCACAATCTGAAAGCAGAGGCGGTTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTCTTCTCATGATTGCGTTTCTTGTTAGCTATTTGAAGTTATTCCCACAGAAGAGACCCTTGATCCTTGCTCCAAAAACTACACTTTATACTTGGAACAAAGAATTTATCAAGTGGCAGATTCATGTGCCAGCGTATCTAATTAATAGTCGTAAAGACCAGAGAAATTTCAGTGAAAAAGCATTGGCTCTTCCTGGACTTCCAAATCCCAATGAGGATGTCAAGCATACTTTGGATTGCCTTGACAAGATACAAAAGTGGCAAGCACACCCCTGTGTTCTGGTCATGGGGTACACATCATTCTTATCATTGATGAATGAGGATTCAAAGTTTGAACACAAGAGTTACATGGCTAAAGCATTGAGGGAAAGCCCTGGGATTCTTATCCTGGATGAAGGACACAACCCTAGAAGTACAAAATCAAGGTTGAGGGAAGCGTTGATGAAAGTGGAGACAGAACTGAGAATACTACTCTCTGGCACATTATTTCAGAACAATATCTGTGAGTACTTTAACACACTCTGCTTGGCAAGGCCAAGGTTTATCCACGAAGTGCTGAATGTGTTAGATCCAACATATGTAAGGAGTGAAGCAGAAAACAAAGCTCCCCATATAGTTGAGTCACGGGCTAGGAAATTCTTCCTAGATATCATTGGGGCGAAAATTGACTCGGGTAATGCTCATGAGAAGATGGAGGGCATAAACATGTTGAAGAGCTTCACTAGTGGTTTCATAGATGTTTATGATAGTGAGATTGCAGATAGTCTTCTACCTGGTTTACAAATTTATACGTTGCTGATGAATAATATTGAGAAGGAGAGTGAGATCTTGCAGAAACTGCAGAAGAAAATGAATCAGAGTAGTGGGTACCCTCTAGAGGTAGAGTTTTTGATAACCCTTGCATCAATACATCCATGGTTGATCACAACAACAGAATGTGCCAAAAAGTTTTTCAGTTTGGACCAATTGAAGCAGCTAGACAAATGCAAGGATGATATGAAAATATGGTCAAAGGTGAAATTTGTTCTGAGCCTTGTTTTACGTGTTACGAAGAAGGAGAAGGTTCTTATATTTTGCCGCAACCTCGCACCAATGTGGCTTCTTTTGGAGTTATTTGAGAAGTTCTTCATATGGAAAGAAGGTAAAGAAGTTTTAACACTTCATGGGGATCAAGAGCTGTTTGAACGTGGGAAAGTTATAGACAAGTTTGAGAACCGTGGTGGAGCCTCAAAGGTACTCCTTGCTTCGATCACTACTTGTGCTGAAGGTATTATTAGTTTGACAGCAGCATCTCGGGTGATTTTCTTGGACCCAGAGTGGAATCCGTCAAAAACAAAGCAGGCTATTGCACGGGCTTTTCGCTCTGGTCAGGAGAATGCCGTTTATGTGTATCAGCTCTTGGCAGCAGGGTCATTTGAGGAAGATAAGTACACGAAAACTAGTTGGAAAGATTGGGTTTCGAGGATGATTTTCACCGAGGATTTTGTGGAGGACCCTTCCAAGTGGCAAGCAGAGAAGATTGAAGATGATATGCTGAGGGAAATGGCTGAGGTGGACAAGTCTAAATCAGTCCACAAGATACTGAAGAATGAAATGGCATCAACAAATTGA 3444 0.4132 MAPRKIHLHQGKNPLDAYPFEAFSFGSWKPAKFIKIESGNVTLHFMDDDEMAIKNGYSDMRIKSRKASLSDCTSFLRQGIDVCVLSTFQSDNSDQLKSNPVWADAKITSVDRKPHKPDCSCDYYVNFYDNQGDLDFPLQTLCKEVKVIGLDQISILQKLGRKGHDNQPYQWDSSEDCIARSLTKLFLRNFACDISWLVVASLKKNVSFCVRSVDNKILYQILETDSCSSNDYNIRAVNFRLEDGIFFPSIFDVDFFDTKRIVPSEHDSQKVPPSVEGLRRSTRRIKAPERYLGYDLCSGSFRTQKCKIHSGKDDAKWCSSGRYYNPTSRKKHQRKDSSDLDDMMDLQPGWKGQSSRRGTERKRYRSDYSRNMNDEDEEQPRRGRALDATASKKMIDSYMKSMNKIPTKEEAINEQWKEEEEVKISEMEMLWREMDEAMTEIYLEKQTEEGFFPLSLFSGSNVAASTQTKEESTVTCKHNYIVDEQIGERCTRCGFVKTEIKYIFPPFMERRSWRHEERQCIGEEPELMADDGDVDLHLFPTPAACDEPISNETNNVWALIPELREKMHLHQKKAFEFLWQNIGGSMDQGLMEAQSESRGGCVISHSPGAGKTLLMIAFLVSYLKLFPQKRPLILAPKTTLYTWNKEFIKWQIHVPAYLINSRKDQRNFSEKALALPGLPNPNEDVKHTLDCLDKIQKWQAHPCVLVMGYTSFLSLMNEDSKFEHKSYMAKALRESPGILILDEGHNPRSTKSRLREALMKVETELRILLSGTLFQNNICEYFNTLCLARPRFIHEVLNVLDPTYVRSEAENKAPHIVESRARKFFLDIIGAKIDSGNAHEKMEGINMLKSFTSGFIDVYDSEIADSLLPGLQIYTLLMNNIEKESEILQKLQKKMNQSSGYPLEVEFLITLASIHPWLITTTECAKKFFSLDQLKQLDKCKDDMKIWSKVKFVLSLVLRVTKKEKVLIFCRNLAPMWLLLELFEKFFIWKEGKEVLTLHGDQELFERGKVIDKFENRGGASKVLLASITTCAEGIISLTAASRVIFLDPEWNPSKTKQAIARAFRSGQENAVYVYQLLAAGSFEEDKYTKTSWKDWVSRMIFTEDFVEDPSKWQAEKIEDDMLREMAEVDKSKSVHKILKNEMASTN* 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0600 1147 Gene3D - 871 1146 IPR027417 -
Lja6g0600 1147 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 592 791 IPR014001 -
Lja6g0600 1147 SMART ultradead3 563 796 IPR014001 -
Lja6g0600 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 1105 IPR027417 -
Lja6g0600 1147 Pfam SNF2-related domain 582 793 IPR000330 GO:0005524|GO:0140658
Lja6g0600 1147 Coils Coil 874 894 - -
Lja6g0600 1147 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 321 1144 - -
Lja6g0600 1147 CDD SF2_C_SNF 948 1078 - -
Lja6g0600 1147 SMART helicmild6 981 1067 IPR001650 -
Lja6g0600 1147 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 952 1119 IPR001650 -
Lja6g0600 1147 MobiDBLite consensus disorder prediction 355 388 - -
Lja6g0600 1147 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 312 IPR044567 GO:0080188
Lja6g0600 1147 MobiDBLite consensus disorder prediction 326 388 - -
Lja6g0600 1147 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 321 1144 IPR044567 GO:0080188
Lja6g0600 1147 Pfam Helicase conserved C-terminal domain 949 1067 IPR001650 -
Lja6g0600 1147 Gene3D - 544 822 IPR038718 -
Lja6g0600 1147 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 557 793 IPR027417 -
Lja6g0600 1147 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0600 Lja-Chr6 14385290 14398740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0600 976 1085 RAD5 or RAD16-like Gene Family AT5G05130 40.541 9.70e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja6g0600 SNF2_N 7.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0600 K10875 - gmx:100811703 994.956