Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0595 ATGCCCTTGGAGGGGATTTTCATTGAACCCCCCACTTCTACTTCAACTCCTCCTGATCTCTCCCTTCAAATAAGCCCACCCTCCACTTCCTCTTCCTTGATTTGCACCACCTCCACCGCCGCCACCGATTATGAAGGCCGCCACAATCCACCAAGCACCACTAATTTCAATTTTCCTTCAAGGACTGTGCCTCAAGCTCACACTGAGCTCTCTCTTGGAAGAAATTTCAGTGGTGAACCACCCCATCAGTACAACTACAACAACCCTTATTATCAAAACCAGCAACAACAACAACTACTAGCCAGAACAGGAGCAGCAACAACAACTAGCAATTCCACAACTCATCACATCAATCACATAAATTATGGGGTTTCATTGCTTGATGTGTCATCATCAGATGGAGGATTGAGGCCAATCAAGGGGATTCCAGTGTATCACAACCGTTCATTCCCTTTCTTGCCAGTGGAACATTCAAGAGACAAGGATCATCACCATCCCAAGATGTATTTGTATCATCACCTCCCTAATTCTTACCCTCCTTCTAATTCACCCTCCTCTCTTCCTTCTCCTCCTTCTTCTTCTTCTCCTTCACCCTACTTCGCCGGAGCTCTGGATCCCATCTCCTCTCTGAGCTCCGGCGCCTCCGCCGCGGCAGCAGCAGCCTACAGAGCCGCCACCACGACAAGGCTCAACGGGATTTCAGGCGCCGAGCCTTTCAAATCTCACCCCTTGCACCACTACAACGGTGTTGGATTAGGATCCTCTCATGAGACATCACCAGGGCTGATGAGATCAAGGTTCATGCCGAAGCTGCCGACAAAGAGGAGCATGAGGGCACCAAGAATGCGGTGGACAAGCACCCTCCATGCTAGATTTGTCCATGCCGTTGAGCTCCTCGGTGGCCATGAAAGAGCTACACCAAAGTCAGTTCTTGAACTCATGGATGTGAAGGATCTCACATTAGCTCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAGGCCTGCAGTTTCTTCAGGTCTTTCAGATGGATCAGGAGAGGATGACATGTCTCCAGTAGCCAGCAGTGGTGGTCCTCGTCAATTTTCAGATCAAAGAGGCTTGCAGGATCGGCCATTGCAACAAGACATGGATTATTCTTCCACCACCACCACTCTATGGAGTAATTCTTCAAGTAGAGAGCCATGGCCACAAACTAGTTCTAACGAAGTAGAAGGTTTTAGACCAACAATCTTCCAATCACAACCAATTTCAGGAGGGCATCAAATTCAGAAGTGTGATTCAACCCAACTCAAGAACAATTTGTCAGGATCTAATTTAGAGTGTAAGAATCCAAGCTTGGAGTTCACATTAGGAAGACCAGATTGGAATGGCAAAGGACAAGCCTAG 1404 0.4779 MPLEGIFIEPPTSTSTPPDLSLQISPPSTSSSLICTTSTAATDYEGRHNPPSTTNFNFPSRTVPQAHTELSLGRNFSGEPPHQYNYNNPYYQNQQQQQLLARTGAATTTSNSTTHHINHINYGVSLLDVSSSDGGLRPIKGIPVYHNRSFPFLPVEHSRDKDHHHPKMYLYHHLPNSYPPSNSPSSLPSPPSSSSPSPYFAGALDPISSLSSGASAAAAAAYRAATTTRLNGISGAEPFKSHPLHHYNGVGLGSSHETSPGLMRSRFMPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRPAVSSGLSDGSGEDDMSPVASSGGPRQFSDQRGLQDRPLQQDMDYSSTTTTLWSNSSSREPWPQTSSNEVEGFRPTIFQSQPISGGHQIQKCDSTQLKNNLSGSNLECKNPSLEFTLGRPDWNGKGQA* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0595 467 MobiDBLite consensus disorder prediction 170 197 - -
Lja6g0595 467 MobiDBLite consensus disorder prediction 361 409 - -
Lja6g0595 467 Gene3D - 279 336 - -
Lja6g0595 467 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 467 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lja6g0595 467 MobiDBLite consensus disorder prediction 9 34 - -
Lja6g0595 467 MobiDBLite consensus disorder prediction 335 409 - -
Lja6g0595 467 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 467 - -
Lja6g0595 467 MobiDBLite consensus disorder prediction 181 195 - -
Lja6g0595 467 MobiDBLite consensus disorder prediction 442 467 - -
Lja6g0595 467 MobiDBLite consensus disorder prediction 1 34 - -
Lja6g0595 467 SUPERFAMILY Homeodomain-like 277 333 IPR009057 -
Lja6g0595 467 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 280 333 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0595 Lja-Chr6 14261123 14266377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0595 1 464 G2-like Transcription Factor Family AT5G16560 39.010 1.98e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja6g0595 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0595 - - lja:Lj0g3v0089499.2 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0595 6 14261123 14266377 Lja6g0595 6 14261123 14266377 PCT