Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0587 ATGGTTCTATCTTGGACAAGAAGAAACGTTCTCCGCCGTGTCCGCAAGGGGAAACAAAACCAAGTTCCCGATTTGCCGGTGGAGGAGATCGTGATCCCCAACCATTTCCGGTGTCCGGTGAGCCTCGACCTGATGAAGGACCCTGTAACCTTACCAACCGGCATCACCTACGACAGAACCAGCATCGAGAAATGGATCGAAGCAGGGAACAAGAAATGCCCTGTCACAAACCAGATTCTAACAACCTTCGACTTGATCCCAAACCATTCCTTAAGGAGAATGATTCAGGATTGGTGCGTGAAGAACAGCTCGTACGGAATCGAAAGAATCCCCACTCCTCGTGCCCCGTTGAATCCCTTCGAGGTTTCCGAGGTTTGTTCGAGGTTGCTGTCGGCTTCTCAGCGCGGAGATGGGATCAGGTGTGTGGAGTTCGTGGGGAAGATCAAGGGTTGGGGGAGAGAGGGTGAGAGGAACAGGAAGTGCGTGATTGAGAATGGGGCTGGTGTTGTTCTTGCAACCGTGTTTGATTCTTTTGCTAGAGTTTCGGTTCAGAATCATGTGGGTGTTTTGGAGGAGATTTTGGAGGTTTTGACATGGATGATTCCGTTTGGGGAAGAGGGGAGATTGAAATTGAGTTCAGAAGCTTCTGTGAATTGCATGGTTTGGTTTCTGGGTGGTCAAGATTTGGGGGCAAGAAAAAATGCTGCCAGGTTACTGAAGGAAGTCCCAGCTGAGATTTTGGTGGAAACTGAAGGAATTGCTGACGGTTTGATTGAGATTGTTAAGGATTCTATTGGGTCTAATTCTACCAAGGCATGTTTGGCTACAATTTTCAACTTGGTTTCTCATAAAGAGGGAATTGCAGTTGCTGAGAGATTTGTGGAACTGGGTTTGGTTTCATTGCTGCTAGAAATCATTGTGGATTGTGCTGACAAAGGGACATGTGAGAAGGCACTGGGGGTGTTGGATTGTATTTGTGACTGTAAAGAAGGGAAGGATATTGCTAAAAGGAATGCTTTGACTTTGCCTCTTGTGATTAAGGTGTTGAGAGTGTCACATTTAGCTTCCAGTTTTGCTGTTTCTGTTCTTAGGAAGATTTGTGACAAGAGAGAGGAGGCGATTTTGATTGAGGCGCTTCAAGTTGGGGCTTTTCAGAAGCTCTTGGTCATGTTGCAAGTTGGTTGTGATGAGACCACAAAGGAGAATGCTACTGAATTGTTGAAGCTGTTGAATGGTTACAAAGGCAGAGCTGAGTGCATTGACTCTTCATTGAGTTGA 1278 0.464 MVLSWTRRNVLRRVRKGKQNQVPDLPVEEIVIPNHFRCPVSLDLMKDPVTLPTGITYDRTSIEKWIEAGNKKCPVTNQILTTFDLIPNHSLRRMIQDWCVKNSSYGIERIPTPRAPLNPFEVSEVCSRLLSASQRGDGIRCVEFVGKIKGWGREGERNRKCVIENGAGVVLATVFDSFARVSVQNHVGVLEEILEVLTWMIPFGEEGRLKLSSEASVNCMVWFLGGQDLGARKNAARLLKEVPAEILVETEGIADGLIEIVKDSIGSNSTKACLATIFNLVSHKEGIAVAERFVELGLVSLLLEIIVDCADKGTCEKALGVLDCICDCKEGKDIAKRNALTLPLVIKVLRVSHLASSFAVSVLRKICDKREEAILIEALQVGAFQKLLVMLQVGCDETTKENATELLKLLNGYKGRAECIDSSLS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0587 425 SUPERFAMILY RING/U-box 23 108 - -
Lja6g0587 425 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Lja6g0587 425 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 421 - -
Lja6g0587 425 Gene3D - 151 422 IPR011989 -
Lja6g0587 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 109 IPR013083 -
Lja6g0587 425 PANTHER WDSAM1 PROTEIN 13 421 IPR045185 GO:0061630
Lja6g0587 425 SUPERFAMILY ARM repeat 148 408 IPR016024 -
Lja6g0587 425 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Lja6g0587 425 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Lja6g0587 425 CDD RING-Ubox_PUB 36 78 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0587 Lja-Chr6 14113252 14114928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0587 11 422 U-box Gene Family AT5G37490 46.714 4.44e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0587 - - gmx:100800966 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0587 6 14113252 14114928 Lja6g0587 6 14113252 14114928 PCT