Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0586 ATGACTAGAAAGAAGGTCAAACTCGCATTCATAACCAATGACTCAGCGAGGAAGGCAACATTCAAGAAAAGGAAGAAGGGTCTAATGAAGAAGGTTGCTGAACTGAGCACACTTTGCGGGATTGATGCATGTGCTATAGTTTATAGTCCCTATGATCCTCAACCCGAGGTTTGGCCATCGCCATTAGGGGTCCAACGTGTGCTCGCCAAATTCAGGCGAATGCCTGAATTGGAGCAGAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGGATCCAAAAGGCCAAAGAGCAATTGAAGAAACAGAGGAAGGATAACAGAGAAAAGGAGATAACTCAGCTCATGTTTCAGTGCCTCAGTGCAGGTAAAATCTTGCACAACATAAACATGGTTGATTTGAATGATCTTGCTTGGTTGATTGACCAGAACTTGAAGGACATCAATAGAAGGATTGAAGTGTTGACCAAGAATGCTCAAAGCCAAGCCCAAGCCCAAATGGTAGCAGCTGCAGCACCACCAGTGGTGACTGATATTGTAGCCAAGATTGAAGAGAGGTCTCCTGAAGGAAATCATGGCCAGGGACTTGATATGAACATTGATGTGATGCAGAAGCAGCATTGGTTTATGAATTTGATGAATAGTGGTGGTGGTGATGAGGCACTTCCTTTGGGAGATGTTAATCACCAAAATGGGTTTTGGCCAAACCCATTTTTCCACTGA 726 0.4435 MTRKKVKLAFITNDSARKATFKKRKKGLMKKVAELSTLCGIDACAIVYSPYDPQPEVWPSPLGVQRVLAKFRRMPELEQSKKMVNQESFLRQRIQKAKEQLKKQRKDNREKEITQLMFQCLSAGKILHNINMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQAQAQMVAAAAPPVVTDIVAKIEERSPEGNHGQGLDMNIDVMQKQHWFMNLMNSGGGDEALPLGDVNHQNGFWPNPFFH* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0586 241 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lja6g0586 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Lja6g0586 241 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lja6g0586 241 Coils Coil 146 166 - -
Lja6g0586 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lja6g0586 241 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja6g0586 241 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 222 - -
Lja6g0586 241 Coils Coil 87 114 - -
Lja6g0586 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja6g0586 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja6g0586 241 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lja6g0586 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0586 Lja-Chr6 14111783 14112718 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0586 1 215 Type I MADS-box Gene Family AT5G48670 49.606 1.20e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja6g0586 SRF-TF 6.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0586 - - gmx:100813231 391.349