Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0566 ATGGGAAGGCAACCTTGTTGTGACAAAGTTGGGTTGAAGAAAGGGCCATGGACTGCAGAGGAGGATAGGAAGCTCATCAACTTCATCCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGTTGGCAGGATTGTTAAGGTGTGGGAAAAGTTGCAGGCTCAGATGGACTAACTACCTGAGGCCTGACCTAAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTCCATGCTCAACTTGGAAACAGATGGTCTAAGATTGCTTCTCATCTCCCTGGAAGAACTGATAATGAGATCAAGAACCACTGGAATACCCACATAAAGAAAAAGCTCAAAAAATTGGGAATTGATCCTGTTACCCATAAGTCACTCTCTGAGGTTAAAGCACACACACAACAAGAGCAACCATTGCAAGAACAACAAAAACAACCTTCTTCCCCAGATGAATTGGACCCCAAATTTGAACATGAAAATCACCAAAATAAGGACTTAGAGAAACCAGAGAATTCAATTGAGTCATCAACCATCACTGAATCCAAAGAGGAAGACCAAATGATCATGACACCTCTATTTGATTCAATGGAAATAATGAATGGATTCTGCACAGATGAAGTTCCAATTATAAAACCTGATGAGATTCTAGTTCCTTGTGCTCCTTCTTCTTCACAAACCAGCACTTCATCATCTTCTTCTGCTTCAAATTCATCCAATAACTTCCTTGAAGACCTTGTTCTCCCAGAATTTGAGTGGTCTAATATTGAAAATTGCAATGACATCAACAGCATTAACACCAGCATGGCCTTGTGGGATGATGACTTTATTAGAAGTTTGGAGTTTCTTATTAATGAAGATGATGATGGTAACAAGAAACAAGTGTTTGATGCTCCTCTCAATCAGTATCCAAGAATGGTCATGGATTCAGAATCTTGGGCGAATGGATTGTTTTGA 963 0.4019 MGRQPCCDKVGLKKGPWTAEEDRKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKLGIDPVTHKSLSEVKAHTQQEQPLQEQQKQPSSPDELDPKFEHENHQNKDLEKPENSIESSTITESKEEDQMIMTPLFDSMEIMNGFCTDEVPIIKPDEILVPCAPSSSQTSTSSSSSASNSSNNFLEDLVLPEFEWSNIENCNDINSINTSMALWDDDFIRSLEFLINEDDDGNKKQVFDAPLNQYPRMVMDSESWANGLF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0566 320 CDD SANT 16 61 IPR001005 -
Lja6g0566 320 MobiDBLite consensus disorder prediction 151 184 - -
Lja6g0566 320 Gene3D - 11 67 - -
Lja6g0566 320 PANTHER MYB TRANSCRIPTION FACTOR 1 270 - -
Lja6g0566 320 Gene3D - 70 152 - -
Lja6g0566 320 SMART sant 66 114 IPR001005 -
Lja6g0566 320 SMART sant 13 63 IPR001005 -
Lja6g0566 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lja6g0566 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja6g0566 320 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 270 - -
Lja6g0566 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lja6g0566 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja6g0566 320 CDD SANT 74 112 IPR001005 -
Lja6g0566 320 MobiDBLite consensus disorder prediction 134 150 - -
Lja6g0566 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja6g0566 320 MobiDBLite consensus disorder prediction 132 189 - -
Lja6g0566 320 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lja6g0566 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0566 Lja-Chr6 13602995 13605600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0566 1 289 MYB Transcription Factor Family AT1G66230 58.054 5.94e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g0566 Myb_DNA-binding 3.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0566 K09422 - gmx:100803624 477.248