Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0563 ATGGCTTCTTCATTGGATATGTCACTTGATGACAGAATCAAGAACAGGAGTAGCAGAGGGAGAGGTAGAGGACGTGGTGGAGCCCGTTCTGGCCGTGGACCTAGCAGGACTCTTAATGGTGGAAGAATGACTGGTGCCTTTGGTGGTAGAAGAATGACTGGTGCTGTTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTACCACGCGGCCATCATCCTATGCTATTGCCAAGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGAATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATTCAAGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGACCTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTCTATACTAGAAGGAGTGATGCATTTGCTGCTCTCAAACGATATAATAATGTACTTTTGGATGGGAAGCCCATGAAGATTGAAATTGTAGGTGCTGATTCAGAATTGCCCATATCTGCTCGTGTGAATGTCACTGGGGTGAATGGACAGAGAAAGAGGACAGTTGTGATGACGCCTGGAGGTGGTCGAGGTGGAGGTCCAGCTTTGGCTAACCGTGGTGCTGGTTGGGGACGCCGTGGTGGCTCAAGGAGTGCTATTGGTAGTGGGAGTGTACGTGGACGTGGTGGAGGACGTGGGGGCGGCCGAGGCCGTCGTGGCAGGGGTGGAGGCCGGGGTCGTGGAAGAAAGGGTTGGGTTGAGAAGTCGGCTGAGGAACTTGACAAGGAACTGGAGACCTATCATGCTGAGTCCATGCAAATCTCTTGA 903 0.4961 MASSLDMSLDDRIKNRSSRGRGRGRGGARSGRGPSRTLNGGRMTGAFGGRRMTGAVNGGRTTGAVRRGPLMVTTRPSSYAIAKSIRRTRPFPWQNDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGADSELPISARVNVTGVNGQRKRTVVMTPGGGRGGGPALANRGAGWGRRGGSRSAIGSGSVRGRGGGRGGGRGRRGRGGGRGRGRKGWVEKSAEELDKELETYHAESMQIS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0563 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Lja6g0563 300 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 299 - -
Lja6g0563 300 PANTHER THO COMPLEX SUBUNIT 4C 1 299 - -
Lja6g0563 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Lja6g0563 300 Gene3D - 110 190 IPR012677 -
Lja6g0563 300 SUPERFAMILY RNA-binding domain, RBD 19 188 IPR035979 GO:0003676
Lja6g0563 300 SMART FoP_duplication_2 225 300 IPR025715 -
Lja6g0563 300 MobiDBLite consensus disorder prediction 1 64 - -
Lja6g0563 300 SMART rrm1_1 115 187 IPR000504 GO:0003723
Lja6g0563 300 MobiDBLite consensus disorder prediction 257 271 - -
Lja6g0563 300 MobiDBLite consensus disorder prediction 216 281 - -
Lja6g0563 300 CDD RRM_THOC4 114 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0563 Lja-Chr6 13552939 13557580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0563 113 275 Eukaryotic Initiation Factors Gene Family AT2G23350 30.220 3.43e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0563 K12881 - gmx:100801491 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0563 6 13552939 13557580 Lja1g2578 1 30190118 30192533 ECH
Lja6g0563 6 13552939 13557580 Lja6g0563 6 13552939 13557580 ECH
Lja3g0737 3 7477428 7481912 Lja6g0563 6 13552939 13557580 ECH