Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0542 ATGGGTTTCTCCCAAGAAACTTGCACTGATTCCAGAGAATTTTCAAATGCTCAAAACACTCCACCACACTCTTCTTCTTCATCTTCTATAGCATTTGTACCCATTACAGGTCATCACTCCAGTGACCTCAAGAAGCTCAAATTTCGAAACTTTTTGAGAAAAATGATCTGGGATTTCAGTTTCGCCTGCGTTTCCCACCCCTCCCGCCGCCGGGGAAGCTCCGACAGGAACCTTATTCACCACGAAAACGACGGCGGCGACGGCGACAAGAAGAAGATGAGTTTGGAGCACAACAAGGCTTGGTTGCTTGCGGAATCTGGTGGCTGCGGTGGAGTGGAATTGCCCAATGCTGACCCTCAATCGGTTCACTCTTCTTTCAGGTTCAGCTTTTGTTCTCAGGTGGAGTTGGAGTCCTTGAACATGAGTTCCTCCAATGCTGCAACGGTTTTGATGGTGAATTTGGATAATGGGGTGAGTGAATCTCGTGCTAGGGAGATGAAATGGAGGAGAATTGAGTCGTTGGAGAAGAGTATATCACCTGTTGCTCACTCTTTGATCAGGTTCAGCTATGGTGAAATTGTTTCTGCTACTAGGAATTTTTCTAAAGGTAGAGTGTTGGGAAGAGGGGCATTGAGCTGTGTTTTTAGGGGAAGAGTTGGGATTTTGAGAACTGCTGTGGCTATTAAACAGTTGGACAAGGAAGACAAGGAATCTGCCAAGGCTTTTTGTAGAGAATTGATGATTGCTAGCTCACTTCATAGCCCAAACGTGGTTCCCCTTGTGGGTTTTTGTATTGACCCTGAGGAGGGTTTGTTTTTGGTTTACAAGTATGTTTCAGGGGGGAGCTTGGAGCGTCACTTGCATGGGAGGAGGAAGGGTAGTTCACCACTTCCGTGGTCTGTGAGGTACAAGGTTGCAATTGGGATTGCAGAAGCTGTGGCTTATCTGCATAGTGGAACTGAGAGATGTGTTGTTCACAGGGACATTAAGCCCTCAAACATTCTGCTTTCTTCTAAGAAGACTCCCAAGCTATGTGATTTCGGATTAGCTACATGGACTTCAGCACCTTCGGTTACTTTCCTATGCAAAACTGTCAAAGGAACTTTTGGATATTTGGCTCCTGAATATTTCCAACATGGGAAAGTATCGGATAAGACAGATGTTTATGCTTTTGGAGTGGTTTTATTGGAACTAATTACTGGCCGGAAGCCAATTGAAGCAAGAAGGTCTGCAGGAGAGGAGAACTTGGTGTTATGGGCTAAACCTTTTCTGCAGAAGGGGAAAGGAGCCATTGAAGAGTTGCTTGATCCTCAACTAAAGTGCAGTTTGAGATTCTCAAATCAAATGGGTAGAATGATTGAAGCAGCAGCTGCCTGTGTCACAAATGAAGAATCCAGGAGACCCGGCATACATGAGATTATTGCAATACTGAAAGGTGAAGAAGAACCTATTTTCTGCAAAAGAAAGAAGTCCAGTTTTCTCGCGAATGGCTGCGTGATTGATTGTTATTCACAATTACAACAAACAAACAATGAGATGAAAAGTCACTTGGCCTTGGCAATGCTAGGAGTTTCTGAGTTTGAGGATGACGATTATCTCTATGATCGTTAA 1611 0.4438 MGFSQETCTDSREFSNAQNTPPHSSSSSSIAFVPITGHHSSDLKKLKFRNFLRKMIWDFSFACVSHPSRRRGSSDRNLIHHENDGGDGDKKKMSLEHNKAWLLAESGGCGGVELPNADPQSVHSSFRFSFCSQVELESLNMSSSNAATVLMVNLDNGVSESRAREMKWRRIESLEKSISPVAHSLIRFSYGEIVSATRNFSKGRVLGRGALSCVFRGRVGILRTAVAIKQLDKEDKESAKAFCRELMIASSLHSPNVVPLVGFCIDPEEGLFLVYKYVSGGSLERHLHGRRKGSSPLPWSVRYKVAIGIAEAVAYLHSGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVTFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRSAGEENLVLWAKPFLQKGKGAIEELLDPQLKCSLRFSNQMGRMIEAAAACVTNEESRRPGIHEIIAILKGEEEPIFCKRKKSSFLANGCVIDCYSQLQQTNNEMKSHLALAMLGVSEFEDDDYLYDR* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0542 536 MobiDBLite consensus disorder prediction 66 91 - -
Lja6g0542 536 Gene3D Transferase(Phosphotransferase) domain 1 278 492 - -
Lja6g0542 536 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 1 535 - -
Lja6g0542 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Lja6g0542 536 ProSiteProfiles Protein kinase domain profile. 200 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0542 536 SUPERFAMILY Protein kinase-like (PK-like) 187 484 IPR011009 -
Lja6g0542 536 PANTHER OS01G0750732 PROTEIN 1 535 - -
Lja6g0542 536 Gene3D Phosphorylase Kinase; domain 1 184 277 - -
Lja6g0542 536 Pfam Protein kinase domain 201 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0542 536 MobiDBLite consensus disorder prediction 69 91 - -
Lja6g0542 536 SMART serkin_6 200 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0542 536 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0542 Lja-Chr6 12955333 12958845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0542 188 514 Trihelix Transcription Factor Family AT1G70460 40.964 3.90e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lja6g0542 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0542 - - gmx:100786826 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0542 6 12955333 12958845 Lja6g0542 6 12955333 12958845 PCT