Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0539 ATGGCATTGGCCAAACACCAAATTACACATGATTCAATCAACATGGGAAGCAAGGTTCAAACTTGTGTTTTCAATGAGTACCACCACAAATCTCTGCTTGAAGAGGAAGGTGGCTCACAGAATACCAATGGACTCAGCAATGATTCAGCTATAACCCATTCTTCTCCTTCTCTATGTGGTACTAGCAATGATGGGTATGTTTATCATAAGAGTACAAACTATCAGCTTGAAGAAGCAGAGTCTTTGATTGATTTCAAAGACAGTGGGAAAAGCAATCTTATGCAAGCTAGTGGATCTTTGCTTAGCTTTCAGAAAGAGCACTGTGTTTGGGAGAATGATTTGCAGCATCAAGGGTATAACCAATGGAACCAAATTCAGTTAGGAACACAAGAATCAGTCTTGAAAAAACGCCCTTCTATGGGAGAGAACATGAAAGCTGTGAAGAAGCAATGCTCAACTGAGAGTATAGCACCAAAACCAAAGTCAAGCTCATCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGGGAAAGGATAAGTGAGAGGTTGAAGATACTACAAGAACTTGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGCTAGAGAAAGCAATTAGTTATGTAAAGTTTCTCCAATTGCAAGTGAAGGTGTTGGCAACTGATGAATTTTGGCCTGTCCAAGGTGGAAAAGCTCCTGATATTTCCCAAGTAAAAGAAGTCATTGATGCCATTCTTTCATCCCAAAGAGATAGAAGTTCAGGCTCAAACTAG 777 0.4054 MALAKHQITHDSINMGSKVQTCVFNEYHHKSLLEEEGGSQNTNGLSNDSAITHSSPSLCGTSNDGYVYHKSTNYQLEEAESLIDFKDSGKSNLMQASGSLLSFQKEHCVWENDLQHQGYNQWNQIQLGTQESVLKKRPSMGENMKAVKKQCSTESIAPKPKSSSSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEVIDAILSSQRDRSSGSN* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0539 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Lja6g0539 258 Gene3D - 159 221 IPR036638 GO:0046983
Lja6g0539 258 CDD bHLH_AtIND_like 165 227 - -
Lja6g0539 258 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 248 - -
Lja6g0539 258 Pfam Helix-loop-helix DNA-binding domain 174 214 IPR011598 GO:0046983
Lja6g0539 258 MobiDBLite consensus disorder prediction 141 175 - -
Lja6g0539 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 223 IPR036638 GO:0046983
Lja6g0539 258 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 34 248 - -
Lja6g0539 258 SMART finulus 170 219 IPR011598 GO:0046983
Lja6g0539 258 MobiDBLite consensus disorder prediction 146 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0539 Lja-Chr6 12925943 12927161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0539 136 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 76.230 1.74e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g0539 HLH 9.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0539 - - lja:Lj6g3v0435130.1 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0539 6 12925943 12927161 Lja6g0539 6 12925943 12927161 PCT