Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0538 ATGGATAGTCCTCATTCACCTTCTTCTTGTTCTTCCTCCACCTCCTCGACTTGCTCATGGGAGCCTCACGGCGGCGCCACCGACAGTCTTGAATTGGACGAGCCGCGAACGCCGTTGGCCATCCGGCGAGCCCTTCAGCTTCTTAACTCAGGTGAGCCGGAGCTGCGTGTCCAAGCCGCCCGTGACATCCGGCGGCTCACGAAAACCTCCCAGCGCTGTCGGCGCCAGCTCTCTGAAGCCGTCGGTCCACTAGTTTCCATGCTCCGAGTCGACTCGCCCGAGTCACACGAACCCGCTCTTCTTGCGTTGCTTAACCTTGCCGTCAAAGATGAAAAGAATAAAATCAACATTGTGGAGGCCGGTGCATTAGAACCGATAATCAGCTTCCTCAAGTCACAAGATCCAAATCTGCAGGAGTCTGCAACTGCATCTCTGCTCACACTATCTGCTTCTTCAACCAACAAACCAATTATTAGTGCTTGCGGCGCCATTCCTCTTCTTGCTGAGATCCTCCGAAACGGAAGCCTGCAAGCTAAAGCTGATGCAGTAATGGCTCTCGCTAATTTGTCAACACACCCTAATAATCTCAGCGTCATTCTCGAAACAAATCCAATCCCTTTCATAGTTGACCTCCTCAAAACCTGTAAAAAATCCTCAAAAACGGCTGAAAAATGCTGTGCTTTGATAGAAGCATTGGTTGATAATGACGAGTGCAGCAGAACTGCCCTCACATCTGAAGAAGGCGGGATTCTCGCGGTTGTGGAAGTTCTCGAAAGCGGCACTCTCCAAAGCCGGGAGCATGTTGTTGGAGCACTATTGACAATGTGCCAGAATGATAGGTGTAAATACAGGGAACCAATTCTCAGAGAAGGTGTCATTCCAGGGCTTCTTGAGCTCACTGTTCAGGGAACTCCAAAGTCTCAGATAAAAGCGCGAACCCTTTTGCAGCTTCTCCGGGAGTCTCCTTATCCAAGATCTGAAGTTCAACCTGACACTCTTGAGAACCTAGTGTGCAACATCATATCGCAGATTGACGGGGACGAACAATGTGGTAAAGCGAAGAAGATGCTGTCTGAGATGGTTCAAGTCAGCATGGAACAGAGTTTAAGGCATTTACAGCAGAGGGCTCTTGTGTGCACCCCAAGTGACTTGCCTATAGCTGGTTGTGCTTCTGAAGTTCCTTCAAAATGA 1191 0.4979 MDSPHSPSSCSSSTSSTCSWEPHGGATDSLELDEPRTPLAIRRALQLLNSGEPELRVQAARDIRRLTKTSQRCRRQLSEAVGPLVSMLRVDSPESHEPALLALLNLAVKDEKNKINIVEAGALEPIISFLKSQDPNLQESATASLLTLSASSTNKPIISACGAIPLLAEILRNGSLQAKADAVMALANLSTHPNNLSVILETNPIPFIVDLLKTCKKSSKTAEKCCALIEALVDNDECSRTALTSEEGGILAVVEVLESGTLQSREHVVGALLTMCQNDRCKYREPILREGVIPGLLELTVQGTPKSQIKARTLLQLLRESPYPRSEVQPDTLENLVCNIISQIDGDEQCGKAKKMLSEMVQVSMEQSLRHLQQRALVCTPSDLPIAGCASEVPSK* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0538 396 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 121 163 IPR000225 GO:0005515
Lja6g0538 396 SMART arm_5 110 150 IPR000225 GO:0005515
Lja6g0538 396 SMART arm_5 151 191 IPR000225 GO:0005515
Lja6g0538 396 SMART arm_5 192 234 IPR000225 GO:0005515
Lja6g0538 396 SMART arm_5 69 108 IPR000225 GO:0005515
Lja6g0538 396 SUPERFAMILY ARM repeat 40 357 IPR016024 -
Lja6g0538 396 PANTHER U BOX DOMAIN-CONTAINING 28 377 - -
Lja6g0538 396 Pfam Armadillo-like 123 196 IPR006911 -
Lja6g0538 396 Gene3D - 196 373 IPR011989 -
Lja6g0538 396 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 162 204 IPR000225 GO:0005515
Lja6g0538 396 MobiDBLite consensus disorder prediction 1 33 - -
Lja6g0538 396 Gene3D - 36 195 IPR011989 -
Lja6g0538 396 MobiDBLite consensus disorder prediction 1 23 - -
Lja6g0538 396 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 28 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0538 Lja-Chr6 12874653 12878726 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0538 41 319 U-box Gene Family AT2G23140 33.096 7.50e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0538 - - gmx:100809684 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0538 6 12874653 12878726 Lja6g0538 6 12874653 12878726 PCT