Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0532 ATGAGAAAACCTTGTTGTGACAAACAACAAGGCCCTAACAAAGGTGCTTGGTCCAAGCAAGAAGATCAAAAGCTTATTGATTACATCCGTACTCATGGTGAGGGTTGTTGGCGTTCCCTTGCCAAGGCTGCAGGGCTACAACGTTGTGGCAAAAGCTGTAGATTAAGGTGGATAAACTATTTACGACCTGACATTAAACATGGAGACTTTGGTCAAGATGAAGAAGACCTCATCATCAAATTCCATGCCCTCCTCGGCAACCGGTGGTCACTCATTGCTGGAAGGTTGCCGGGACGTACAGACAATGAGGTAAAGAACTATTGGAATTCTCACATCCGCACAAAGCTAATAAAGATGGGCATCGATCCAAATAACCATAAGCTACAACAACACCAACACCAAAGCTTCCCTAAAGTTTCATATGCTTCTGCTGCAGCAACTGCACCATCATCAAATCTAATTACGATCATGAACAAAGAGCAAGGAGTCCCTTTCATAAAATCTAATGGCTCTGTAGAGGAAGCAGCATCAATGGTTTCTTCATCATCCCAATTGAATCTTGACCTGACTATTGCTTTCCCTTCACCTAGAAATCCTCTTGTTGAGGATAAATCTAAGCCTAGTTCTGAGTTCACTAAGATAAGAAAAATGGATGAGGATTCACCCACTACCCTTCCTCTATTTCAATAA 690 0.4232 MRKPCCDKQQGPNKGAWSKQEDQKLIDYIRTHGEGCWRSLAKAAGLQRCGKSCRLRWINYLRPDIKHGDFGQDEEDLIIKFHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRTKLIKMGIDPNNHKLQQHQHQSFPKVSYASAAATAPSSNLITIMNKEQGVPFIKSNGSVEEAASMVSSSSQLNLDLTIAFPSPRNPLVEDKSKPSSEFTKIRKMDEDSPTTLPLFQ* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0532 229 PANTHER MYB TRANSCRIPTION FACTOR 2 226 - -
Lja6g0532 229 CDD SANT 72 112 IPR001005 -
Lja6g0532 229 MobiDBLite consensus disorder prediction 203 220 - -
Lja6g0532 229 CDD SANT 16 61 IPR001005 -
Lja6g0532 229 Gene3D - 14 66 - -
Lja6g0532 229 Gene3D - 69 140 - -
Lja6g0532 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 61 IPR017930 -
Lja6g0532 229 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Lja6g0532 229 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lja6g0532 229 MobiDBLite consensus disorder prediction 197 229 - -
Lja6g0532 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lja6g0532 229 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 226 - -
Lja6g0532 229 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lja6g0532 229 SMART sant 66 114 IPR001005 -
Lja6g0532 229 SMART sant 13 63 IPR001005 -
Lja6g0532 229 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lja6g0532 229 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0532 Lja-Chr6 12758314 12760051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0532 2 195 MYB Transcription Factor Family AT4G09460 52.404 3.92e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g0532 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0532 K09422 - jre:108988219 276.944