Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0530 ATGGGTTGGTTCTGCTTTAGTGCAAAGATCAAAGCTGAGAGCCCTCCTCGCAATGGTTTGAATTCAAAGGATGGTAAAACAGAAGAATATGGTTTGAGTAATGGTTTAAGCAGCAGGGTCTCCTCTTCATCTGTGCTTCTAAGTTGTCGGACAGAAGGAGAGATATTGCAATCCAGCAACTTGAAGTGCTTCACATTCAATGAGGTACGAACCGCGACTAGGAACTTTCGACCAGATAGTTTGGTGGGTGAAGGTGGGTTCGGTTGTGTATTTAAAGGGTGGATTGATGAGCACACACTTGCCCCTACTAAACCAGGAACTGGATTTGTCATTGCTGTGAAGAGGCTTAACCAAGATGGAAGCCAGGGACACAGCGAATGGCTGACAGAAATAAACTACCTAGGGCAGTTGCGACATCCTAATCTTGTGAAACTGATTGGTTACAGCATAGAGGATGACCACAGGATTTTGGTATATGAATTTTTGGCCAAGGGAAGTTTGGATAATCATTTATTTAGAAGGGCTTCTTACTTTCAGCCACTCTCGTGGAACATCCGGATGAAGATTGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGAAGTAATCTATAGAGACTTCAAAACTTCTAACATCTTGATTGATTCGAACTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAGATGGACCAGCAGGTGATAAGAGCCATGTATCTACAAGGGTAATGGGCACCTTCGGCTACGCAGCTCCTGAGTACATAGCCACAGGTCACCTAACCAAAAAGAGTGATATATACAGTTTTGGGGTTGTTCTCCTGGAACTGATGTCAGGCAAACGTTCATTCGACAAAAACAGGCCATCAGGGGAGCATAATCTAGTTGAATGGGCCAAGCCATACCTCAGCAACAAGCGCAAGATCTCACAAGTCATGGATCCCCGAATAGAAGGCCAATACTCATTGCGTGAAGTGTGGAAAGCAGCTCACCTTGCATCTCAATGCCTATCTGTAGATTCCAAATTTAGGCCAAACATTGATGAGGTTGTGAGATCATTAGAGCACCTTCATGATTCCAAAAGCACAGGTTCTAAAGAACATGGAACAAGTGTTAATGATTCTTCAAATGGAGAAGGTACTCCTATTCCAAGTACATCAGCTTCTCCTCTTCATTCATAG 1194 0.433 MGWFCFSAKIKAESPPRNGLNSKDGKTEEYGLSNGLSSRVSSSSVLLSCRTEGEILQSSNLKCFTFNEVRTATRNFRPDSLVGEGGFGCVFKGWIDEHTLAPTKPGTGFVIAVKRLNQDGSQGHSEWLTEINYLGQLRHPNLVKLIGYSIEDDHRILVYEFLAKGSLDNHLFRRASYFQPLSWNIRMKIALDAAKGLAFLHSDEVEVIYRDFKTSNILIDSNYNAKLSDFGLAKDGPAGDKSHVSTRVMGTFGYAAPEYIATGHLTKKSDIYSFGVVLLELMSGKRSFDKNRPSGEHNLVEWAKPYLSNKRKISQVMDPRIEGQYSLREVWKAAHLASQCLSVDSKFRPNIDEVVRSLEHLHDSKSTGSKEHGTSVNDSSNGEGTPIPSTSASPLHS* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0530 397 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Lja6g0530 397 PANTHER KINASE 1B 26 374 - -
Lja6g0530 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lja6g0530 397 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0530 397 PANTHER OS01G0588500 PROTEIN-RELATED 26 374 - -
Lja6g0530 397 Pfam Protein kinase domain 79 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0530 397 Gene3D Transferase(Phosphotransferase) domain 1 162 383 - -
Lja6g0530 397 MobiDBLite consensus disorder prediction 361 397 - -
Lja6g0530 397 SUPERFAMILY Protein kinase-like (PK-like) 60 359 IPR011009 -
Lja6g0530 397 Gene3D Phosphorylase Kinase; domain 1 51 161 - -
Lja6g0530 397 MobiDBLite consensus disorder prediction 370 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0530 Lja-Chr6 12730534 12734329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0530 4 361 Glycoside Hydrolase AT3G07070 44.199 4.59e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja6g0530 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0530 - - gmx:106795104 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0530 6 12730534 12734329 Lja6g0530 6 12730534 12734329 ECH
Lja6g0530 6 12730534 12734329 Lja6g0530 6 12730534 12734329 PCT