Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0520 ATGGGAGGTGGGGACGATTTCCGGCGCCGTCGTGAGTTATACTCCACATATGAACAACAGCGAATCCATGGGGAGACAAGTATAGATGATCGATCAAAGGAGGTGACTTTGTTCATTGACGGTCTGGGCGAACAAACAACGTACCGACACATCAAGAACATGTTTTCACCAATAGGCACGATTGTAGGGATTTTTGTTCAGAGATTTAAGAAGAGTCACCGTGCTCATAAGTTCGGTTTTGTTAGGTTCTCATCGAAGAAAGAGGCTGCACTAGCCATCAAATCATTCAACGGAAAGAAAGCTTTTGGTTCCTACCTTAAAGTTTCATTGGCCAGATATCCTTTCAATTTCCCAGGGGAGAAAAGACAGGTCAACTCAACCAGAGATAAAAGGCACGGAAGCAATAGACAGAGCAGATTTCCTGGGCCTTTTTATGAACAGAAAATGAAACAGAGGCCTTTTTACGAACAGAAAATGAAACAGAGATGGATCCCCAAGGAGGATAGAACGTGCCCCTCACAGAAGGAAGACAATGTCCAAGATCCCGATACTCCTCCGATGGAGGAAATGAAAGAATGGTTAGATAGAATCCTCATCGGATCCTTGAGAGGAACTTTCAATATGGACTCAGTGCAGTCTTTCCTTGACGCTCTGAGTTCCTCCAAAGTTCGAGCTAAGCCATGGGGTGCAAGCGAAATCATACTGGAGTTTCAAAATAGTAGTGAGAGGTTGCTTTTTCTGGCAAATGAAGGAAGGGCATCTGCTCACTTTTTCGAACTGTTGAGAACTCCGCTTCCCCACTCGGTTCCCCCATCTCATTTCATTTGGGTCAAGATCAGAAATGTACCACTGGGTGCATGGTGCGAAGAATTCTTTAGGCTAGTTTCCTATTCGGTGGGTTCTCTCATCTGCCTCGATGAGATGACGAAGAACAGGGAAAGGCTGGATGTGGCCAGATTACTAATCAAATCCCCCTCAGCCTTTCTCCCCTCAAAGAGCTACGAAGTCCAGTTTCACAACATCAAAGCTCGGATTACCATGGAGATGGATGCTAGCTACGACTTTAGAATTAACCGGAATGTCGAAGACGATCCATTCGAAGGGGAATCGTCTTTACAAGAAGCAAACCATGGTGGTGAGGATTCAGGGGGTACCATCGTCGCAGAAACGGAATCCATTAGTGAGGCCAGCGAACCCTCAAAGCGGCCGGAATCAGACACGTACGACTTAGAGGTGGTTTCCGAGCGTCACATCGTGATCTCCGATGACCTGCAAAACTGTCAGTGCACAGTGGGATCCCATTGGTCGAAAGACTATACTCATGGGACCCTTCAATGGGTCAACCCAGGGAACCAATCTACTTTGGGGATCAGCAACCACACACTTTCTATGCCCAGGAATTTGACTATCTCACGAGGGGAATCTGTATCCAGTATCATCAACCTAGGGAGGGATGTATACATCAAAATAACAAATGCAGGTTACGAAGGCTCACCATACTGGCCCCCTCTCCTTTTTGAGGTATTTTTTCAAAATATGATAAACATCAGGTCAACTCTGAGGGCCCCACTTGATGCCATACGTGTGCAAAGTCTTAACCCTATTCCCACCGCACAAAGGGTGCCACAATTTCTGTTAGGTTGGAGTGATGGTAATGGGCCGGATGCGAATGGCCCATCTAAATTACTTGTGGTTGGCCCGGAACTAAACCCTGAACCACAACCTGAAGCAGCCCCAACGAAGAGAGGCAGGGGACGACCCAGAAAATCCCTTCCTCCCCTTCAGAAATCCTCTGCACCATTATCCAATCAATTGGCCCCTCCCACCTTTGCTTCCTCATCCTCTCGGCGTGTATGTGGGGTGGTGTCTCCGACCACATCGCCGCCCTCTTCTGTGGACCATTCTGATGAAGCTGACCTGATACTTTCTCATCAACAAATCATCCGTGGTAGAGGCACTGACACCAGATTCAACAGAGCTAAGGAAGCATGGGTACTCGCGAAAGCTATGGGTCTTGAGTTCCCAGGTACTGACGAACTAGCGATTCAGGGGCTGGAGTTGGAGTTGGATAGAATCATAGCTGACCGATAG 2091 0.4754 MGGGDDFRRRRELYSTYEQQRIHGETSIDDRSKEVTLFIDGLGEQTTYRHIKNMFSPIGTIVGIFVQRFKKSHRAHKFGFVRFSSKKEAALAIKSFNGKKAFGSYLKVSLARYPFNFPGEKRQVNSTRDKRHGSNRQSRFPGPFYEQKMKQRPFYEQKMKQRWIPKEDRTCPSQKEDNVQDPDTPPMEEMKEWLDRILIGSLRGTFNMDSVQSFLDALSSSKVRAKPWGASEIILEFQNSSERLLFLANEGRASAHFFELLRTPLPHSVPPSHFIWVKIRNVPLGAWCEEFFRLVSYSVGSLICLDEMTKNRERLDVARLLIKSPSAFLPSKSYEVQFHNIKARITMEMDASYDFRINRNVEDDPFEGESSLQEANHGGEDSGGTIVAETESISEASEPSKRPESDTYDLEVVSERHIVISDDLQNCQCTVGSHWSKDYTHGTLQWVNPGNQSTLGISNHTLSMPRNLTISRGESVSSIINLGRDVYIKITNAGYEGSPYWPPLLFEVFFQNMINIRSTLRAPLDAIRVQSLNPIPTAQRVPQFLLGWSDGNGPDANGPSKLLVVGPELNPEPQPEAAPTKRGRGRPRKSLPPLQKSSAPLSNQLAPPTFASSSSRRVCGVVSPTTSPPSSVDHSDEADLILSHQQIIRGRGTDTRFNRAKEAWVLAKAMGLEFPGTDELAIQGLELELDRIIADR* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0520 696 Pfam Domain of unknown function (DUF4283) 188 322 IPR025558 -
Lja6g0520 696 SUPERFAMILY RNA-binding domain, RBD 34 141 IPR035979 GO:0003676
Lja6g0520 696 MobiDBLite consensus disorder prediction 595 633 - -
Lja6g0520 696 MobiDBLite consensus disorder prediction 365 385 - -
Lja6g0520 696 MobiDBLite consensus disorder prediction 166 186 - -
Lja6g0520 696 MobiDBLite consensus disorder prediction 121 143 - -
Lja6g0520 696 CDD RRM_SF 37 109 - -
Lja6g0520 696 Gene3D - 9 154 IPR012677 -
Lja6g0520 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 106 IPR000504 GO:0003723
Lja6g0520 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Lja6g0520 696 MobiDBLite consensus disorder prediction 549 636 - -
Lja6g0520 696 SMART rrm1_1 36 109 IPR000504 GO:0003723
Lja6g0520 696 ProSitePatterns HMG-I and HMG-Y DNA-binding domain (A+T-hook). 578 589 IPR000637 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0520 Lja-Chr6 12535234 12537324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0520 9 112 Eukaryotic Initiation Factors Gene Family AT1G49760 33.654 2.84e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0520 - K13126 lja:Lj0g3v0282289.1 198.749