Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0513 ATGTTACCATTGTCTCAGCCTATTGATTTTCCCCACTCCGAACAAGGAGTGAAATATTCTCATGTGAATATTTATAAGTGTCTTGATGATGGCTACAACTGGAGAAAATATGGGCAGAAGATGGTGAAAGGCTTTGTGTTCACTCGAAGATATTATGTGTGCACACATCAAGGTTGTCTTGCTAAGAAGAAGATTGTGCATTCTATTGATGGTATTGTAACCGAAATCAATGATAAGGAAAAACACAATCATGGACCTCCTAATCCCATCAAGCTCACTTCACATGAAAGTTCGACCATGCAAGAATCTAGACATGAAACGATTCATCATGTGTCAGGAACAAGTGATAGGCAAAAAGTAGGTCATCATCAAGTGATTAAGATAAATGATGAACCTATTACCAAAAGAAGAAACACAGAAGCAATTCCTCAGGATATTCTATCATCTTTTCGCAGCAAAGGCCCAAAGCCTAGAGTCATTCTAAAAACAATAAGTGATATGGATATTTTAGATGATGGATTTAAATGGCTCAAATATGGGCAGAAAGTTAGAAAAGGCAACCCAAATCCAAGGAGCTATTACAAATGCGCAAATCCAGGGTGCATTGTTAGGAAGCTTGTTGAGAGGGATTCAACAGATCAAAGAGTTGTCGTAACAATATATGAAGGAAAACATAATCATGATGTGCTACGTACTACCTTCAACTACTATCCTTCTTCTTTCCAACAATAG 732 0.3743 MLPLSQPIDFPHSEQGVKYSHVNIYKCLDDGYNWRKYGQKMVKGFVFTRRYYVCTHQGCLAKKKIVHSIDGIVTEINDKEKHNHGPPNPIKLTSHESSTMQESRHETIHHVSGTSDRQKVGHHQVIKINDEPITKRRNTEAIPQDILSSFRSKGPKPRVILKTISDMDILDDGFKWLKYGQKVRKGNPNPRSYYKCANPGCIVRKLVERDSTDQRVVVTIYEGKHNHDVLRTTFNYYPSSFQQ* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0513 243 ProSiteProfiles WRKY domain profile. 165 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 SMART WRKY_cls 28 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 SMART WRKY_cls 170 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 18 94 - -
Lja6g0513 243 Gene3D WRKY domain 15 88 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 PANTHER WRKY TRANSCRIPTION FACTOR 58-RELATED 95 229 - -
Lja6g0513 243 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 229 IPR044810 GO:0003700
Lja6g0513 243 Gene3D WRKY domain 157 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 94 IPR044810 GO:0003700
Lja6g0513 243 MobiDBLite consensus disorder prediction 78 99 - -
Lja6g0513 243 ProSiteProfiles WRKY domain profile. 28 87 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 Pfam WRKY DNA -binding domain 29 84 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 Pfam WRKY DNA -binding domain 171 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 SUPERFAMILY WRKY DNA-binding domain 163 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja6g0513 243 SUPERFAMILY WRKY DNA-binding domain 25 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0513 Lja-Chr6 12262458 12263549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0513 28 87 WRKY Transcription Factor Family AT1G13960 47.541 9.67e-11 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja6g0513 WRKY 8.1e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0513 - - gmx:100802109 228.794