Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0511 ATGATGTCTTCTGGGACATCTTCATATTGGTGCTACAGGTGCAGTCGCTTTGTGAGGGTGTTTAGACAGGACACGGTGGCATGCCCTGATTGCGAGAGTGGATTTATTGAAGAGGTTGACCATCCAGCGGCGCGTTCTGTCCACGCGGATTCCCGCCGCCGGAGGTTTCCTGCTGCGGCGATGTACATGATCGGCCAACGTCCCGGTTCTGATCAGACTTCGCGTCCCTCTGGTTTGCGCCGAACGCGCCGTAACGGTGGTGAACGGTCGCCGTTTAATCCGGTGATTGTCCTCCGCGGCGCCGCCGCCGCCGCGGAGGAAGGGGAGAGTCGAGGGTTTGAGCTGTTTTATGATGATGGGTCTGGTTCTGGTCTTAGGCCTCTGCCGCCGAGCATGTCTGAGTTTCTTCTGGGATCTGGGTTTGATAGGCTTCTGGAGCAGCTTTCTCAGATTGAGATTAATGGTATTGGGAGGTATGAGCATCCTCCGGCGTCGAAAGCGGCTATCGATTCGCTACCGACGATTGAGATTGATTCGGGTCATTTGGCTATGGAATCTCATTGTGCTGTTTGCAAGGAGGCTTTTGAGATGGGAGCTTCGGTGAGGGAAATGCCTTGTAAGCATATATATCATCCTGAATGTATTTTGCCGTGGCTCGCGCTTCATAATTCTTGCCCTGTTTGTCGCCATGAGTTGCCTGTTGATGCTGCTCCGAGTCCACAACCGGCACCGGTAACAGGGCAATCTGTTCCTGTGAGTGAGGAGGAGAATGTGGGGTTGACGATTTGGAGGTTGCCTGGTGGTGGTTTTGCTGTGGGGAGATTTTCTGGTGGGAGGAGAGGGGCTGAGAGGGAGCTTCCTGTTGTATACACTGAAATGGATGGTGGGTTTAACAATGGGGGTGGTGAGCCGAGGAGGATTTCTTGGTCTTCTAGAGGGAGTAGAGGGAGGGAGAGTGGAGGGTTTGGGTTTGGTTTGGGGAGGATGTTTCGAAATTTGTTTGGTTGCTTCAGAGGTGGTAGTGGTGGTGGTGGTGATGGAGGAGTTGGAACAGCAACGCAGCGCTCTACTTCTACTAGAGAGTCTCGGTCATTGAGGGCGAGTTCATCTCGTTCTAGTACTAGGGATCCTTCACCGCGATCACGCAGGACTTGGTCTATGGATGTCAATAGTGGAATGAGAGCATGGTAA 1191 0.5315 MMSSGTSSYWCYRCSRFVRVFRQDTVACPDCESGFIEEVDHPAARSVHADSRRRRFPAAAMYMIGQRPGSDQTSRPSGLRRTRRNGGERSPFNPVIVLRGAAAAAEEGESRGFELFYDDGSGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDSGHLAMESHCAVCKEAFEMGASVREMPCKHIYHPECILPWLALHNSCPVCRHELPVDAAPSPQPAPVTGQSVPVSEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGGEPRRISWSSRGSRGRESGGFGFGLGRMFRNLFGCFRGGSGGGGDGGVGTATQRSTSTRESRSLRASSSRSSTRDPSPRSRRTWSMDVNSGMRAW* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0511 396 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Lja6g0511 396 MobiDBLite consensus disorder prediction 295 317 - -
Lja6g0511 396 MobiDBLite consensus disorder prediction 64 92 - -
Lja6g0511 396 SMART ring_2 188 228 IPR001841 -
Lja6g0511 396 Pfam zinc-ribbon 8 38 IPR039525 GO:0061630
Lja6g0511 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 3 332 - -
Lja6g0511 396 CDD RING-H2_RNF126_like 188 229 - -
Lja6g0511 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
Lja6g0511 396 SUPERFAMILY RING/U-box 168 235 - -
Lja6g0511 396 MobiDBLite consensus disorder prediction 341 396 - -
Lja6g0511 396 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 332 - -
Lja6g0511 396 MobiDBLite consensus disorder prediction 350 375 - -
Lja6g0511 396 Pfam Ring finger domain 187 229 IPR001841 -
Lja6g0511 396 Pfam Protein of unknown function (DUF1117) 258 367 IPR010543 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0511 Lja-Chr6 12223262 12225387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0511 127 235 C3H Transcription Factor Family AT5G01980 41.284 1.51e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0511 - K11982 gmx:100807324 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0511 6 12223262 12225387 Lja6g0511 6 12223262 12225387 ECH
Lja3g0691 3 6865325 6867388 Lja6g0511 6 12223262 12225387 ECH