Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0508 ATGGCTTCAATCTTCTCCCTCAACGACTGCAACAAAAAACATTGTTCTTCTTGGACAGAAAAACAGAACAAACAATTTGAAATGGCATTAGCTTTGTATGATGAAGATTCATCAGATCGCTGGAAAAATATAGCCAAAGCAGTTGATGGAAAATCAGAAGAGGAAGTGAAGACGCACTATGCGATTCTTCTCGAAGATATTAATAACATAGAGTGTGGACATATTCCAATCCCCAACTATGGTGAGCCTATGGAAAATACTATTGATGTGCAGAGGTAA 279 0.3763 MASIFSLNDCNKKHCSSWTEKQNKQFEMALALYDEDSSDRWKNIAKAVDGKSEEEVKTHYAILLEDINNIECGHIPIPNYGEPMENTIDVQR* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0508 92 ProSiteProfiles Myb-like domain profile. 16 64 IPR001005 -
Lja6g0508 92 PANTHER PROTEIN RADIALIS-LIKE 3 11 81 - -
Lja6g0508 92 SUPERFAMILY Homeodomain-like 17 71 IPR009057 -
Lja6g0508 92 CDD SANT 17 60 IPR001005 -
Lja6g0508 92 SMART sant 14 66 IPR001005 -
Lja6g0508 92 ProSiteProfiles SANT domain profile. 13 68 IPR017884 -
Lja6g0508 92 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 11 81 IPR044636 GO:0003700
Lja6g0508 92 Pfam Myb-like DNA-binding domain 16 60 IPR001005 -
Lja6g0508 92 Gene3D - 9 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0508 Lja-Chr6 12186867 12187145 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g0508 Myb_DNA-binding 3.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0508 - - jre:108991638 108.227