Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0500 ATGGCGAATCGATGGTGGACTGGGAATGTGGCTATGAGAAGGGAGCAAGAATTCATGGAAAACAACAACAACGCCGCCGGAAACGCTGTTGCTACTCCGACCAACAGCAGCAACAGCAACACCAACGCGACGGAGGATGAGGAGAACAACAACAACAACCACAACAACGCAGAGGAGCAGAATCCCGGCAGCCATGATGGGTCGGAGCCGGGGAGCAGCGGGAGGAGGCCGAGGGGCAGGCCGCCGGGGTCGAAGAACAAGCCGAAACCTCCGGTTGTGATTACCAAGGAGAGCCCCAACGCGATGCGGAGCCACGTGCTGGAGATCTCCAGTGGCAGCGACGTGGTGGAGTGCATAGCCGCCTTTGCTAACCGCCGCCACCGCGGCGTGTCGGTTCTCAGCGGGAGCGGCATTGTCACCAACGTGACTCTCCGCCAGCCGGCTGCCCCGGGTGGCATCATTACCCTCCATGGGAGGTTCGAGATACTCTCGCTGTCCGGAGCGTTCCTGCCGTCACCATCACCTCCGGGAGCCACCGGGCTGACAGTGTACTTAGCCGGCGGGCAGGGGCAGGTGGTTGGTGGCGCGGTTGCGGGCTCGCTGGTGGCTTCCGGGCCGGTGATGGTGATTGCAGCAACATTCGCGAATGCTACTTTTGAGAGGCTGCCCTTGGAACCGGAAGAGCAAGGTGAAGAGGAAATGCAGGTTCGGCAGCAACAACAACAATCAGGGGTTAATAATTCATCAGCAAGTGTTGGAGCTTCTGCTACTGTGGTTTCTCAAGGATTAGGTGAACAGCAACAACAGGTTTCGATGCCAATGTATAATTTGCCTCCAAATTTGATGCACAATGGTCAGATGCAGCCTCATGATGTGTTCTGGGGACCTCCACCTCGTCCTCCACCTTCTTTCTGA 915 0.5781 MANRWWTGNVAMRREQEFMENNNNAAGNAVATPTNSSNSNTNATEDEENNNNNHNNAEEQNPGSHDGSEPGSSGRRPRGRPPGSKNKPKPPVVITKESPNAMRSHVLEISSGSDVVECIAAFANRRHRGVSVLSGSGIVTNVTLRQPAAPGGIITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATFERLPLEPEEQGEEEMQVRQQQQQSGVNNSSASVGASATVVSQGLGEQQQQVSMPMYNLPPNLMHNGQMQPHDVFWGPPPRPPPSF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0500 304 MobiDBLite consensus disorder prediction 226 304 - -
Lja6g0500 304 MobiDBLite consensus disorder prediction 21 100 - -
Lja6g0500 304 MobiDBLite consensus disorder prediction 21 68 - -
Lja6g0500 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 304 IPR014476 GO:0003680
Lja6g0500 304 Coils Coil 40 60 - -
Lja6g0500 304 SUPERFAMILY AF0104/ALDC/Ptd012-like 99 227 - -
Lja6g0500 304 PIRSF ESCAROLA 14 304 IPR014476 GO:0003680
Lja6g0500 304 CDD DUF296 103 185 IPR005175 -
Lja6g0500 304 Gene3D - 102 244 - -
Lja6g0500 304 MobiDBLite consensus disorder prediction 235 275 - -
Lja6g0500 304 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 22 304 - -
Lja6g0500 304 ProSiteProfiles PPC domain profile profile. 99 237 IPR005175 -
Lja6g0500 304 Pfam Plants and Prokaryotes Conserved (PCC) domain 103 215 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0500 Lja-Chr6 12076925 12078611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0500 1 304 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 53.517 1.76e-76 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0500 - - gmx:102667174 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0500 6 12076925 12078611 Lja6g0500 6 12076925 12078611 ECH
Lja6g0500 6 12076925 12078611 Lja6g0500 6 12076925 12078611 PCT